Plant FIBer expression Database

Potri.005G139800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G23420 981 / 0 NAPRT2 nicotinate phosphoribosyltransferase 2 (.1)
AT4G36940 976 / 0 NAPRT1 nicotinate phosphoribosyltransferase 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G045400
[exp]
1102 / 0 AT2G23420 972 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009367
[exp]
1010 / 0 AT2G23420 955 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
Lus10019337
[exp]
1006 / 0 AT2G23420 946 / 0.0 nicotinate phosphoribosyltransferase 2 (.1)
PFAM info
Representative CDS sequence
>Potri.005G139800.1 pacid=42804575 polypeptide=Potri.005G139800.1.p locus=Potri.005G139800 ID=Potri.005G139800.1.v4.1 annot-version=v4.1
ATGGATCAGCAGGTGAAAGCGAATGGGAATTGTTCCGGCCGGGTTGTGGAGGGACCGACGAACCCGATGGTAACACCCCTTTTGACGGACCTTTATCAGT
TTACAATGGCTTATGCTTATTGGAAAGCCAATAAACATCAAGAGCGAGCTGTGTTCGATCTATATTTTCGGAAGAATCCATTTGGTGGCGAATATACAGT
CTTTGCTGGTTTAGAAGAATGCATCAGGTTAATTGCGAATTTCAAGTTTACCGAGGATGAAATCTCTTTCATCCGTGAAAGTCTTCCTGGTTCATGTGAG
GATGGTTTCTTCGATTATCTTAGAGGATTGGACTGCTCAGAAGTTGAAGTATATTCCATTGCAGAGGGTTCAGTTGTCTTCCCCAAGGTACCTCTGCTAA
GAATAGAAGGACCAATTGCTGTGGCGCAATTGCTGGAAACCCCATTAGTGAATCTTGTCAATTATGCATCTTTAGTGGCCACAAATGCAGCTAGGCATCG
ATTTGTTGCTGGAAAATCAAAAATGCTTCTTGAGTTTGGGCTTCGACGGGCTCAGGGACCTGATGGTGGGATATCAGCATCAAAATATTGCTACCTTGGA
GGATTTGATGCAACAAGCAATGTTGCAGCTGGACGGTTATTTGGGATACCTCTGCGTGGAACACATTCCCATGCATTTGTCAGCTCATATATGAGCCCTG
ATGAGATCATAGACAAGTCGCTTCGAAGTGCTGATGGATCAAGTAGTTGTGAGGACCTCGTCAGTTTAGCTCAGACATGGTTAAGTAAAATTCAGTGGTC
AAGTTCATTACGTGGTATTTTTGGTGAGACCAATCAAAGTGAGCTGGCAGCTTTCACCTCATATGCCTTGGCGTTCCCTATAAGCTTTTTAGCTCTTGTT
GACACATATGACGTTATGAGGAGTGGAATCCCTAACTTTTGTGCAGTTGCTCTCGCACTTAATGATCTTGGATATAAAGCGGTAGGCATTAGATTAGATT
CTGGTGATCTAGCATATTTGTCTTGTGAGGCCCGGAAGTTCTTTAGAGCCATTGAGAAAGAATTTGGAGTTCCTGGTTTTGGAAAGATGAGCATTACTGC
TAGTAATGACCTCAATGAGGAAACTTTAGATGCTTTAAACAAACAGGGTCATGAAGTTGATGCATATGGAATCGGAACCTATCTTGTAACTTGCTATGCT
CAAGCTGCTTTGGGTTGTGTCTTCAAGCTTGTTGAAATAAACAATCAGCCTCGCATCAAACTTTCTGAAGATGTTTCAAAGGTTTCTATACCATGCAAAA
AACGGAGTTATAGATTGTATGGAAGAGAAGGCTACCCACTGGTGGACATAATGACAGGGGAAAATGAACCATCTCCAAAGGTGGGAGAACGGATACTATG
TCGCCATCCTTTTAATGAATCCAAGAGAGCGTATGTGGTTCCACAGCAGGTTGAGGAGCTTCTAAAGTGTTATTGGCCTGGGAGCTCAGATAAACCAAGA
GAAGATTTACCTCCTCTCAAGGACATTAGAGATCGCTGTATCAAGCAGCTTGAGATAATGCGTCCTGATCACATGAGGCGGCTGAACCCAACACCATACA
AGGTGAGTGTAAGCGCAAAATTGTATGATTTCATCCATTTTCTATGGCTCAATGAGGCACCTGTCGGGGAGTTGCAGTGA
AA sequence
>Potri.005G139800.1 pacid=42804575 polypeptide=Potri.005G139800.1.p locus=Potri.005G139800 ID=Potri.005G139800.1.v4.1 annot-version=v4.1
MDQQVKANGNCSGRVVEGPTNPMVTPLLTDLYQFTMAYAYWKANKHQERAVFDLYFRKNPFGGEYTVFAGLEECIRLIANFKFTEDEISFIRESLPGSCE
DGFFDYLRGLDCSEVEVYSIAEGSVVFPKVPLLRIEGPIAVAQLLETPLVNLVNYASLVATNAARHRFVAGKSKMLLEFGLRRAQGPDGGISASKYCYLG
GFDATSNVAAGRLFGIPLRGTHSHAFVSSYMSPDEIIDKSLRSADGSSSCEDLVSLAQTWLSKIQWSSSLRGIFGETNQSELAAFTSYALAFPISFLALV
DTYDVMRSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRAIEKEFGVPGFGKMSITASNDLNEETLDALNKQGHEVDAYGIGTYLVTCYA
QAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKRSYRLYGREGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQQVEELLKCYWPGSSDKPR
EDLPPLKDIRDRCIKQLEIMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G23420 NAPRT2 nicotinate phosphoribosyltrans... Potri.005G139800
[exp]
0 1
AT5G56260 Ribonuclease E inhibitor RraA/... Potri.011G169700
[exp]
4.12 0.8063
AT3G57630 exostosin family protein (.1.2... Potri.006G054800
[exp]
5.09 0.7816
AT3G50210 2-oxoglutarate (2OG) and Fe(II... Potri.007G047100
[exp]
6.48 0.7345 Pt-DIN11.1,2OGox15
AT5G17680 disease resistance protein (TI... Potri.019G069600
[exp]
8.66 0.7748
AT3G14470 NB-ARC domain-containing disea... Potri.017G140132
[exp]
15.49 0.7689
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.004G024800
[exp]
15.87 0.7587
AT1G14780 MAC/Perforin domain-containing... Potri.010G104600
[exp]
17.14 0.7625
AT1G55730 ATCAX5 cation exchanger 5 (.1.2) Potri.010G249200
[exp]
17.60 0.7660
AT5G67220 FMN-linked oxidoreductases sup... Potri.007G047300
[exp]
18.16 0.7629
AT5G57035 U-box domain-containing protei... Potri.006G147000
[exp]
18.33 0.7461

Potri.005G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.