Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34040 160 / 2e-41 RING/U-box superfamily protein (.1) AT1G45180 154 / 2e-39 RING/U-box superfamily protein (.1) AT2G15530 146 / 1e-36 RING/U-box superfamily protein (.1.2.3.4) AT5G42940 143 / 1e-35 RING/U-box superfamily protein (.1) AT1G73760 117 / 2e-28 RING/U-box superfamily protein (.1) AT5G10650 118 / 7e-28 RING/U-box superfamily protein (.1.2) AT5G24870 116 / 3e-27 RING/U-box superfamily protein (.1.2) AT4G31450 115 / 5e-27 RING/U-box superfamily protein (.1) AT1G53190 114 / 2e-26 RING/U-box superfamily protein (.1.2) AT1G17970 110 / 4e-26 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045500 [exp] 771 / 0 AT4G34040 163 / 1e-42 RING/U-box superfamily protein (.1) Potri.002G124300 [exp] 226 / 1e-64 AT5G42940 377 / 3e-121 RING/U-box superfamily protein (.1) Potri.001G304900 [exp] 166 / 3e-43 AT4G34040 370 / 4e-118 RING/U-box superfamily protein (.1) Potri.009G100100 [exp] 163 / 3e-42 AT4G34040 392 / 5e-127 RING/U-box superfamily protein (.1) Potri.010G220700 [exp] 119 / 5e-28 AT2G37150 180 / 6e-50 RING/U-box superfamily protein (.1.2.3) Potri.006G274700 [exp] 118 / 7e-28 AT5G24870 263 / 4e-81 RING/U-box superfamily protein (.1.2) Potri.018G005600 [exp] 115 / 9e-27 AT5G24870 284 / 6e-89 RING/U-box superfamily protein (.1.2) Potri.015G043900 [exp] 110 / 5e-26 AT1G73760 258 / 2e-83 RING/U-box superfamily protein (.1) Potri.011G097100 [exp] 112 / 1e-25 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010372 [exp] 159 / 4e-41 AT5G42940 353 / 2e-112 RING/U-box superfamily protein (.1) Lus10024810 [exp] 138 / 5e-34 AT5G42940 316 / 4e-98 RING/U-box superfamily protein (.1) Lus10013497 [exp] 112 / 9e-28 AT1G73760 199 / 1e-62 RING/U-box superfamily protein (.1) Lus10007967 [exp] 112 / 1e-27 AT1G73760 188 / 8e-58 RING/U-box superfamily protein (.1) Lus10021722 [exp] 112 / 4e-27 AT1G17970 159 / 1e-45 RING/U-box superfamily protein (.1) Lus10040389 [exp] 115 / 8e-27 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10020145 [exp] 114 / 1e-26 AT4G31450 224 / 4e-67 RING/U-box superfamily protein (.1) Lus10026941 [exp] 112 / 9e-26 AT5G24870 257 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10034644 [exp] 106 / 1e-25 AT1G17970 139 / 3e-39 RING/U-box superfamily protein (.1) Lus10042443 [exp] 101 / 3e-22 AT5G10650 242 / 2e-73 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G139900.1 pacid=42805620 polypeptide=Potri.005G139900.1.p locus=Potri.005G139900 ID=Potri.005G139900.1.v4.1 annot-version=v4.1 ATGGCAGGTCAAGGTAGCGAGTCTAATGCCTACCCAGGAAAGTTTTATTTCGGCTGTGGTCCCAATGCCATAAATCATCTGTGCAATCAGAATGTAGATT CGGATGATCTTTCGTTGGAAGAAATGCAATCTGATCAGATGAACACTGCCTCTTCAGCTAATGTGAGCCTGCGCGATAGTCAGCTCGCCAATGGACCGTC AGCTACACTGGCGGCTAATTCCAGTGCTCTCCCTCACAACATAGACTTGAATGCTGCATATCAAGGCAATGACATCGGTGACAGTCAGGAAATAGGAGGA TCGGACACTGAAAAAAATGCGCCTGCAAGTGATTCATCTAATTCTAATACAAATATGATCTCTTCTGGAATTGCCGGGTATGTGTTGGACGAAGACGAGG GTGGAGAAGATTCTGACTCAGGTGGTAGGCGTATATCCTGCAAAAGAAGAGCTCCCGAAGATGCTGGACAACTGTCTCTGGGTGAAAGTTCGAGATCAGT GAAGCAAGGAGATAGTTTTCAACAGCCAGCTGTTATTAATCAAGAAAATGCTCCTGGAAGATCCGCCGTGAATAATCACCCAAATGCTGGTTATCCAGGA CAGCTTGGAGATAGACTTGTGGTTGGTGTCGGAGCACCTCCTGCCCCTTGTCAACCTTCAAGTGCTGCAGGAAGTGGACTTGGAACTGAAGCTGGAACAA GTTCTGAAATGCACCAGAATTCAAGTATGGTTAGACAAGCTGAGAACTCCCAGCGAAATATCCGTTTGAGAAGTTCTGAAAGTCAATCAGATTCTGTGCC TGATAACCTGTCTGCTTGGACCACAAGGAATCCTCATGTGCAATCACCTGGCCAACTACCTGTGTTTTATCAATTCAATCACCTTCCAAGTTCAAACACA GCTGCAGAAGCGGGAATGGTTAGTGTACCTTCTCCAATACAGCCTTTTATGGGCACTCCCAATTCTTCGCAGACACTACAGACCTTCCAGTGGAATGATG TCACCAGGGCAACAACCGGTGAGCCATCTACTTCCTCTATGAATGGAGGCAATGCCTTGCATCAGGATCTGAACTTCATGAATGATCCGAAGAATGGAAC GCTTCCTCCTGAATTTCAAAGGGCAAATTTGCCGAATATGTCAGCAAACCTTCACTTTGCAAATGGGAGAGATTTTCCAGGAAACATATCTCCCATTCCC CAAAATGGCTCAAGTTCACACCAACCATCTGCCCCCACTTTGTTTCCCCAACGCAACATGTTAGAACACTATCCTGGCAGAATGCCTGACCTTGCCAATC GCACTGAGCCTGGGGGACCAGTTTGTTACAGGCCATTTCATTTGGGTGCTTCACCTGCTGCAGAAGAGAGGGAATTATCAGAGGGGAGTGGTAATATAAG GCCTTCTCAAATGCCACTTGGGCAAGGCTTGGCAATGACTGCCAACACAGAAACTGCCACTCGTGAAATGACACTCTGGGCTTTGATTTCTGTTCAGAGG AGAAACAGACTGGCAACTGAGGTTCGCAATGCTCTGACACTTGTGCTCATGAGGGGTTCATTACAGCATGGGGATGTTATGTTAATTGACCGTTCAGCTT TCTTCGGTGACTCTGATGACGACGAGCCTGATGAACATGAAGATATGCGTCTTGATGTGGACAATATGTCCTATGAGCAACTGCTGGCTCTGGAGGAGCG AATGGGGAATGTTTCCACTGGATTAAGTGAGGATGCTATTGTGGCAAATCTGAAGCGGTGGAAGTATCAAACAGTTGCAGGAGGATCTAGCAGTGAAGAT GAACCATGCTGCATCTGTCAGGAGGAATATGCTGATGAAGATGATCTGGGAAAGCTGAAATGTGGGCATGACTTTCACTTCAACTGCATTAAGAAGTGGC TCGTTCAGAAGAATAATTGTCCCATCTGCAAAAAGCCAGCCGTGGATGTTTGA
AA sequence Show only first row Show all	>Potri.005G139900.1 pacid=42805620 polypeptide=Potri.005G139900.1.p locus=Potri.005G139900 ID=Potri.005G139900.1.v4.1 annot-version=v4.1 MAGQGSESNAYPGKFYFGCGPNAINHLCNQNVDSDDLSLEEMQSDQMNTASSANVSLRDSQLANGPSATLAANSSALPHNIDLNAAYQGNDIGDSQEIGG SDTEKNAPASDSSNSNTNMISSGIAGYVLDEDEGGEDSDSGGRRISCKRRAPEDAGQLSLGESSRSVKQGDSFQQPAVINQENAPGRSAVNNHPNAGYPG QLGDRLVVGVGAPPAPCQPSSAAGSGLGTEAGTSSEMHQNSSMVRQAENSQRNIRLRSSESQSDSVPDNLSAWTTRNPHVQSPGQLPVFYQFNHLPSSNT AAEAGMVSVPSPIQPFMGTPNSSQTLQTFQWNDVTRATTGEPSTSSMNGGNALHQDLNFMNDPKNGTLPPEFQRANLPNMSANLHFANGRDFPGNISPIP QNGSSSHQPSAPTLFPQRNMLEHYPGRMPDLANRTEPGGPVCYRPFHLGASPAAEERELSEGSGNIRPSQMPLGQGLAMTANTETATREMTLWALISVQR RNRLATEVRNALTLVLMRGSLQHGDVMLIDRSAFFGDSDDDEPDEHEDMRLDVDNMSYEQLLALEERMGNVSTGLSEDAIVANLKRWKYQTVAGGSSSED EPCCICQEEYADEDDLGKLKCGHDFHFNCIKKWLVQKNNCPICKKPAVDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	12.96	0.6291
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.007G099000 [exp]	13.85	0.6044
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G048000 [exp]	16.58	0.6319
AT5G63390			O-fucosyltransferase family pr...		Potri.015G092600 [exp]	24.00	0.5283
AT5G12060			Plant self-incompatibility pro...		Potri.006G170200 [exp]	25.49	0.5280
					Potri.019G089200 [exp]	27.74	0.5672
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	32.55	0.5470
AT4G34770			SAUR-like auxin-responsive pro...		Potri.009G127400 [exp]	42.57	0.4666
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.012G060700 [exp]	45.49	0.5084
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	57.70	0.4745

Compare expression of checked genes

Potri.005G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.