Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67140 335 / 8e-118 F-box/RNI-like superfamily protein (.1) AT2G25490 67 / 1e-12 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G77000 60 / 2e-10 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT5G23340 59 / 7e-10 RNI-like superfamily protein (.1) AT5G01720 57 / 3e-09 RNI-like superfamily protein (.1) AT3G58530 56 / 3e-09 RNI-like superfamily protein (.1) AT5G25350 54 / 2e-08 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 54 / 3e-08 F-box/RNI-like superfamily protein (.1) AT1G21410 52 / 6e-08 SKP2A F-box/RNI-like superfamily protein (.1) AT1G12820 49 / 8e-07 IPS1, AFB3 auxin signaling F-box 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045601 [exp] 180 / 2e-58 AT5G67140 151 / 2e-47 F-box/RNI-like superfamily protein (.1) Potri.006G254100 [exp] 56 / 5e-09 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 53 / 5e-08 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.005G185700 [exp] 53 / 5e-08 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.007G048101 [exp] 52 / 1e-07 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.002G074700 [exp] 51 / 2e-07 AT1G21410 518 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.018G027700 [exp] 50 / 4e-07 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.017G056400 [exp] 50 / 5e-07 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.006G068500 [exp] 50 / 5e-07 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039564 [exp] 328 / 6e-115 AT5G67140 317 / 1e-110 F-box/RNI-like superfamily protein (.1) Lus10024178 [exp] 288 / 1e-99 AT5G67140 271 / 4e-93 F-box/RNI-like superfamily protein (.1) Lus10018942 [exp] 61 / 1e-10 AT1G21410 513 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10036412 [exp] 61 / 1e-10 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10002014 [exp] 61 / 2e-10 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10028645 [exp] 59 / 4e-10 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10041087 [exp] 59 / 8e-10 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10002913 [exp] 59 / 8e-10 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 58 / 2e-09 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10013444 [exp] 56 / 5e-09 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.005G140000.1 pacid=42802595 polypeptide=Potri.005G140000.1.p locus=Potri.005G140000 ID=Potri.005G140000.1.v4.1 annot-version=v4.1 ATGGAGAGAGAAGAGGCAGAGATTGATCGTTTACCAATAGACTTAGTGGCTTACATATTTGGTTTCATCGTTTCCTTCACTGATTTAGCCCAGGCAAGTA GTGTCTGCAGGAAATGGAAAGAAGGGGTGAAGCAATCTTTAGCTCAAAGAAACAGTATGAGCTTTGCTGGTTGGAAGATGGATGATGTTTCCACTACCCG TCTTGTACGCCTTGCTTACAACCTCAAAGAACTTGACATTTCTAGGAGCCGTTGGGATTGCCAGATAACTGACAATGGACTGTATCAAATTTCTCTGGCG AATTGTATTGGCAACTTGACATCCATATCTCTATGGGGCATGGCCAGGATCACTGACAGAGGTGTTGTTCAACTGATTTCAAGGGCTAATTCATTGCAAC ACCTGAACATTGGTGGTACATTTGTCACAGATGAGTCTTTATTTGCTATTGCAGATAGCTGTCCACGTTTAAAGAGCATTGTCCTATGGAGCTGCCGCCA TGTAACAGAAATTGGGCTTCTTAATCTAGCAAATAAATGCCGAAAACTCGAATCAATCAATGTATGGGGAACCAGAGTTCCTGTAAACTGCTTCATTGAT TTGCTGACTATTAGCCCTTCCCTTCAAATTAAACCACCAGGAGTGCTTTTAAACGTTGGAGGTGCTGCAATATTGCCAGTCGCATGA
AA sequence Show only first row Show all	>Potri.005G140000.1 pacid=42802595 polypeptide=Potri.005G140000.1.p locus=Potri.005G140000 ID=Potri.005G140000.1.v4.1 annot-version=v4.1 MEREEAEIDRLPIDLVAYIFGFIVSFTDLAQASSVCRKWKEGVKQSLAQRNSMSFAGWKMDDVSTTRLVRLAYNLKELDISRSRWDCQITDNGLYQISLA NCIGNLTSISLWGMARITDRGVVQLISRANSLQHLNIGGTFVTDESLFAIADSCPRLKSIVLWSCRHVTEIGLLNLANKCRKLESINVWGTRVPVNCFID LLTISPSLQIKPPGVLLNVGGAAILPVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67140			F-box/RNI-like superfamily pro...		Potri.005G140000 [exp]	0	1
AT3G51130			unknown protein		Potri.005G117200 [exp]	1.41	0.8273
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Potri.008G157500 [exp]	2.82	0.8027
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.003G221301 [exp]	3.74	0.7813
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Potri.010G045500 [exp]	4.00	0.7734
AT4G32190			Myosin heavy chain-related pro...		Potri.006G255800 [exp]	4.24	0.7619
					Potri.008G141600 [exp]	4.47	0.7614
AT5G37290			ARM repeat superfamily protein...		Potri.001G225300 [exp]	10.95	0.8160
AT1G16250			Galactose oxidase/kelch repeat...		Potri.010G004500 [exp]	13.03	0.7487
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	13.41	0.7973	SHL1.1
AT2G38000			chaperone protein dnaJ-related...		Potri.006G095400 [exp]	17.74	0.7314

Compare expression of checked genes

Potri.005G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.