Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG916,Pt-CLF.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23380 1042 / 0 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT4G02020 627 / 0 SDG10, SWINGER, SWN, EZA1 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) AT1G02580 340 / 2e-104 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT5G42400 96 / 6e-20 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT4G27910 96 / 6e-20 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 94 / 2e-19 SET29, ATX5, SDG29 SET domain group 29 (.1) AT2G31650 93 / 5e-19 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G76710 90 / 2e-18 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT3G61740 89 / 8e-18 SDG14, ATX3 SET domain protein 14 (.1.2) AT4G30860 88 / 9e-18 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045800 [exp] 1573 / 0 AT2G23380 1063 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Potri.014G120100 [exp] 501 / 1e-163 AT4G02020 877 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G195700 [exp] 501 / 6e-163 AT4G02020 883 / 0.0 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Potri.002G001000 [exp] 102 / 7e-22 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 100 / 4e-21 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 98 / 5e-21 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G098400 [exp] 95 / 1e-19 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.015G014300 [exp] 94 / 2e-19 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G170600 [exp] 94 / 2e-19 AT3G61740 1140 / 0.0 SET domain protein 14 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019336 [exp] 1051 / 0 AT2G23380 905 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10009369 [exp] 975 / 0 AT2G23380 804 / 0.0 SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) Lus10041386 [exp] 227 / 3e-62 AT4G02020 489 / 9e-161 SWINGER, SET DOMAIN-CONTAINING PROTEIN 10, SET domain-containing protein (.1) Lus10025172 [exp] 102 / 1e-21 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016051 [exp] 100 / 4e-21 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10016600 [exp] 92 / 3e-19 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10012626 [exp] 94 / 4e-19 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 93 / 5e-19 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10026725 [exp] 92 / 9e-19 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 92 / 1e-18 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.005G140200.1 pacid=42804247 polypeptide=Potri.005G140200.1.p locus=Potri.005G140200 ID=Potri.005G140200.1.v4.1 annot-version=v4.1 ATGGCGTCGCCGCCGCCATCGCCACCGCCGTCTGCTTCCATCACCAGATCGGAGCCTCCTAAGGACTCTCCGATGATAAAGTCTAATCAGGATACCACTC TTGCAAGCGAAGAGGTTTTATTAGTTATTGAATCGTTAAAGAAGCAAGTTGCGGCTGACCGATGCGTTTATGTTATGAAAAGGATGGAAGAGAACAGACA AAAGTTGGTTGGCATTACAAACCACCTCGATAAGTTGTCAAAGGAAAGGAAGAACAATTGGATTAGCGGTACTGACAACAGTATAGATTTATTTACAAAG AGGCAAAACGATGCACTCAGTATGCATGGTGGTATTGACTCGACTAATGTAGATAAGGATAGCCATGGCTCTGAAGAAGATGGTCATGCTTCCACTGCAG TTCTTTTGGGTTCCAGTATTCCAGTGAAGAATGCAGTACGGCCTATTAAGCTACCTGAAGTGAATAGATTACCACCTTATACATCATGGGTTTTCTTGGA CAGAAATCAAAGAATGACAGAGGATCAATCAGTGGTTGGTCGAAGGAGAATTTATTATGACCAAAATGGGGGTGAAGCACTAATCTGCAGTGACAGTGAA GAGGAAATAATTGATGAAGAAGAGGCGAAGAGATATTTTGTAGAATCTGAAGATTATATTCTGCGGATGACAATCAAAGAAGCTGGTTCATCCGATCCAG TGGTGGAATCACTAGCTCATTGTTTTTCTAGAAGCCCTAGTGAAGTGAAGGCAAGATTTGAGGTTCTTAAGAAGGAAGAGAAGGCTGTGGAGGATTCTAA GAATAAAGATATTGAAGCACAAACACTGAATTCTTTCCTTGTTAAAGATCTTGAAGCTGCTTTGGATTCGTTCGACAACCTATTTTGTCGCAGATGCCTT GTATTTGATTGTAGATTACATGGATGTTCGCAGGATCTTATCTTCCTTGCTGAGAAACAATCTCCATGGAGCTATCCAGAAGACAACATAACATGTGGGT CACACTGCTACAAATTGGTTTTGAAGTCAGAAAGAATTGCCTCAGGGATTTCTCCTCAGCATGGGGTTATTGAAGAAAATTCTATCTGTCAATCAGATGG TGCTAGGGTACCTATATCATCAAGGAAGAAAACTTCTGCTTCATCTGCCAGAAGGAACGTGAAGTCCTGCCAAAGTGAAAGTGCTTCATCAAATGCAAAA AACATTTCAGAGAGCAGTGACTCAGAGATTGGACCTCATCAGGACACCTCTCCCACTAGTCAGATATCACCTTCCAAGTCTATGCTTGTGGGGAAAGGTG GGACTTGTAAGAGGAACAGCAAGCGAGTGGCTGAACGTGTTCTAAGTTGCATGCGGAAAAGGCAGAAGAAAATGGTGGCTTCTGATTCCGATTCTGTTGC TAGTGGAGGCCTTTTGTCAATTGATTTGAAACGTAGATCCACCTCGCACAAAGGAAAGGAAGATGCAAGTTCTTCTCATAAGAATGCAAAATCTCCCACC ATTGCAAGGTCTAGGAGGAAAGAATTGATGAATCAGGACAGCCACAACTTAGTGCAGGGTGAATTTCATGATGGTCTATCAAGTGAGATGGTCGCTAATC CACCTGTGACTAGCAGTGATGACACCTTGAGGAAAGAAGAGTTCATAGATGAACATAAATGTAAAAAAGAGTTAAGTGATGACAGATCTTGGAAAGCTAT TGAAAAAGGCCTATTTGAGAAAGGTGTTGAGATTTTTGGCGGGAACAGTTGCTTAATTGCTAGGAACCTTTTAAATGGTTTAAAAACATGCTGGGAGGTT TTTCAATACATGACTCGCTCTGAGAATAGGCCAGCATGCGAAGCAGGTGATGCTGGAACTCTTGGTGAAGGGTACTCCAAGTTTGATTTCAATGGAACAA TGGTTAAGAATGAAGCAAGAAGGAGATCAAGATTTTTAAGGAGAAGAAGTAAAGTTCGTCGCTTGAAGTACTCTTGGAAATCTACTGCTTACCATTCTTT TAGGAAGCGGATAACTGAAAGAAAAGATCAACCTTGTCGTCAGTATAATCCATGTAGTTGTCAAACTGCTTGTGGAAAGCAGTGCACTTGTTTGCTAAAT GGCACGTGTTGTGAGAAGTATTGCAGATGTCCTAAGAGTTGCAAGAACCGATTTAGAGGCTGTCATTGTGCTAAAAGTCAATGTAGAAGTCGTCAATGTC CATGCTTTGCTGCAGACAGGGAATGTGATCCAGATGTTTGTAGGAATTGTTGGATTAGTTGCGGTGATGGTACTCTCGGTATTCCCAGCCAAAGGGGGGA TAATTATGAATGCAGAAATATGAAGCTTCTTCTTAAACAACAACAGAGGGTTTTACTTGGAAGATCTGATGTATCAGGCTGGGGTGCTTTCTTGAAGAAT AGTGTTGGCAAGCACGAGTACCTGGGTGAGTACACTGGTGAGCTGATTTCACATAGGGAAGCAGATAAGCGTGGGAAGATATATGACCGTGAAAATTCAT CATTTCTCTTCAATCTCAATGATCAGTTTGTTCTTGATGCATACCGGAAGGGTGACAAGCTAAAGTTTGCCAACCATTCTCCAGACCCTAATTGCTACGC TAAGGTCATAATGGTTACAGGGGATCACCGAGTGGGCATATTCGCCAAAGAACGAATTAATGCCGGGGAGGAACTTTTCTATGATTATCGTTATGAGCCA GACAGAGCTCCTGCCTGGGCTAGGAAGCCTGAAGCATCTGGATCAAAGAAGGAAGATGGTGGTCATTCAAGTGGCCGTGCAAAGAAGCTTGCTTAA
AA sequence Show only first row Show all	>Potri.005G140200.1 pacid=42804247 polypeptide=Potri.005G140200.1.p locus=Potri.005G140200 ID=Potri.005G140200.1.v4.1 annot-version=v4.1 MASPPPSPPPSASITRSEPPKDSPMIKSNQDTTLASEEVLLVIESLKKQVAADRCVYVMKRMEENRQKLVGITNHLDKLSKERKNNWISGTDNSIDLFTK RQNDALSMHGGIDSTNVDKDSHGSEEDGHASTAVLLGSSIPVKNAVRPIKLPEVNRLPPYTSWVFLDRNQRMTEDQSVVGRRRIYYDQNGGEALICSDSE EEIIDEEEAKRYFVESEDYILRMTIKEAGSSDPVVESLAHCFSRSPSEVKARFEVLKKEEKAVEDSKNKDIEAQTLNSFLVKDLEAALDSFDNLFCRRCL VFDCRLHGCSQDLIFLAEKQSPWSYPEDNITCGSHCYKLVLKSERIASGISPQHGVIEENSICQSDGARVPISSRKKTSASSARRNVKSCQSESASSNAK NISESSDSEIGPHQDTSPTSQISPSKSMLVGKGGTCKRNSKRVAERVLSCMRKRQKKMVASDSDSVASGGLLSIDLKRRSTSHKGKEDASSSHKNAKSPT IARSRRKELMNQDSHNLVQGEFHDGLSSEMVANPPVTSSDDTLRKEEFIDEHKCKKELSDDRSWKAIEKGLFEKGVEIFGGNSCLIARNLLNGLKTCWEV FQYMTRSENRPACEAGDAGTLGEGYSKFDFNGTMVKNEARRRSRFLRRRSKVRRLKYSWKSTAYHSFRKRITERKDQPCRQYNPCSCQTACGKQCTCLLN GTCCEKYCRCPKSCKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWISCGDGTLGIPSQRGDNYECRNMKLLLKQQQRVLLGRSDVSGWGAFLKN SVGKHEYLGEYTGELISHREADKRGKIYDRENSSFLFNLNDQFVLDAYRKGDKLKFANHSPDPNCYAKVIMVTGDHRVGIFAKERINAGEELFYDYRYEP DRAPAWARKPEASGSKKEDGGHSSGRAKKLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	0	1	SDG916,Pt-CLF.2
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	2.82	0.8291
AT2G22600			RNA-binding KH domain-containi...		Potri.007G012000 [exp]	4.00	0.8255
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	6.00	0.7249
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Potri.012G060400 [exp]	8.12	0.7807
AT1G02960			unknown protein		Potri.002G208058 [exp]	8.24	0.8064
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Potri.004G141500 [exp]	10.67	0.8179
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.014G129900 [exp]	12.68	0.7382
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.006G244000 [exp]	13.41	0.7392
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G132900 [exp]	15.49	0.7298
AT3G58640			Mitogen activated protein kina...		Potri.002G214400 [exp]	16.52	0.7211

Compare expression of checked genes

Potri.005G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.