Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23360 551 / 0 Plant protein of unknown function (DUF869) (.1) AT1G19835 251 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 228 / 2e-61 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 202 / 5e-53 Plant protein of unknown function (DUF869) (.1) AT3G19370 117 / 1e-26 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT3G05270 109 / 2e-24 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 102 / 7e-22 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 80 / 4e-15 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046100 [exp] 1563 / 0 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 422 / 1e-131 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 421 / 2e-131 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.002G024400 [exp] 289 / 7e-82 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 284 / 3e-80 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 110 / 2e-24 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 109 / 2e-24 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 108 / 6e-24 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 107 / 1e-23 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004994 [exp] 823 / 0 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10024324 [exp] 274 / 7e-77 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 269 / 3e-75 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 256 / 9e-71 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 251 / 8e-70 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 237 / 2e-68 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10019839 [exp] 206 / 1e-53 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10014076 [exp] 184 / 1e-46 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10018164 [exp] 95 / 2e-19 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 93 / 6e-19 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.005G140300.2 pacid=42805096 polypeptide=Potri.005G140300.2.p locus=Potri.005G140300 ID=Potri.005G140300.2.v4.1 annot-version=v4.1 ATGGACCATAAAACATGGCTGTGGAGGAAGAAATCTACAGACAAGATTGTTGCTGCAACTGATCCTAAAGTTGAACTTTCTTCAAAAGAAGAAGAGATAC AGACACTCTTGGATAATAAGGCAGAATTGGAGAATGATCTGAAAATTTTGAGTGAGAGGCTTTCATCTGCCCTGTCTGAGTGTAATGCCAAAGATGATCT TGCAAAGAAACAAGCCAAGCTGGCAATGGAAGCCATGGCAGTCCAAGAGAAAGCAGAAGCAAAAGCACTGTCTCTAAAGCAAGAATTAGATGAAGCCTTA CAGCAAAGAGCTGCTGGAGAAGAAAGATTGACTCATCTGGATGCAGCCCTCAAGGAGTGTATGCAGCAGCTACGTTTCGTTCGAGAAGAGCAGGAGCGAA GGATTCATGATGCTGTGATGAAGACATCCAATGAGTTTGAAAAGTCCCAAATGATTTTGGAAGAGAAGCTGGCAGACACTGGTAAAATGCTTGCGAAAAT AGGTATTGAGAAGGCTAATCTAAGTAAGGCTTTCTTAGAAAAAGAAAGGTTGGTTGAAGATTTAAGTAAGCAAAAGGCTCAGGTGGAGGCAGATTTTATT GCTCTGATGGGTAGGTTAGAGTCCACAGAAAAAGATAGTGCTTCTCTCAAATATGAAGTACGTGTGCTAGATAAGGAGCTTGAGATCCGAAATGAGGAAA GAGAGTTTAACCGCAGAACAGCTGATTCATCTCACAAGCAACACTTAGAGAGTGTGAAAAGAATTGCAAAGTTAGAAGCAGAATGTCAGAGGCTGCGTCT CCTAGTCCGCAAGCGGTTGCCTGGCCCTGCTGCCGTGGCTAAAATGAAAAGTGAAGTAGAAATCCTTGGAAGAGATTCAGTTGAAGTGAGCAGGAGAAGG TCAAATTGTAGTCCTATTGGTTTAGTGGTTGACTCAGCTGTTGGAAACTCTGCTGAATCTCCCAGCAAAAAGATCAACTTTCTGACTGAGCAGTTATGTG CCATGGAAGAAGAAAACAAGACTCTTAAAGAAGCCCTTGATAAAAAAACAAATGAGCTCCAAGTATCGAGAACCATGTATGCTCGCACAGCTTCCAAATT ATCACAGGTTGAGTCACTTTTTGATGAGTTGCCAAAAGGACAGATAACCTTAGAGCGATCGAGGAGCGTGCGTATGCCACAGGAGCTCTCTCTGGCTTCA ATGTCTGAGATTGGCAGTGATGATAAGGTTAGTTCTGCTGAATCTTGGGCTTCTGCTTTGATTTCAGAAATGGAGCACTTCAAACAGGGAAAGCAAAAAG GGTCACCAACAAACAGAACCATAGGAGTTTCAGATATATCCCTGATGGATGACTTTGCTGAAATGGAAAGACTTGCAATAGTCTCAGTTGATAAGCAGCT CGAAAGTCCTCATGCTTCTTCTGACAATGTTAATGCAATTGGTCAGGAGATAATTCCAGTATCAGAATCTCGCTCTGGGGTATCAAACCAGGTGATCAAG TCTAAAGACAAAGCTTCCGGTTGGCTACACGACATTCTGAAAGTCGTGTTGGAGCAAAATCGTGTCACACAAAGAAAACCTTGTGAAATACTGGAGGATG TTAGAATAGCTCTGGCAAATATAAATCATGCAAGCCCTGCAGAATATGTTGATACAAGGCAAAGCTCAACACATTCAAATGGATTAAACTCCCCTCATGT TGGTGGATACATCTCATGGAAACCTATGTATTCAGTGACTGATTCACCAGGTGGAGTTACTGAAGCTGAGGCCTTGTCGATGGATAAGAGCCATCAGCAA GTCCAGTCAGATCTCGGCAAATCACTCTGCAAGATTATTGAGCTTATTGAAGGGATCGCTTTCTCATATGCTGATTATGGTAACTCAGAGACCTTGACCA GAAAGGATGGGGATTTTTTTCCATTTAAGAATACAGAAACACCTCCAGGCTACATGGTCCGTGTTTTGCAGTGGAAAACGTCTGAACTATGTGCTGTATT ACAGGAATTTGTCCATGCTTGTTATGATCTTTTGAATGGAAAATCTGATGTGAACATGTTTGCCCAAGAATTAGGTTCTGCTTTGGACTGGATTATGAAC CACTGCTTTTCCATCCAAGATGTTTCAAGCATGAGAGATGCAGTTAAGAAGCATTTTGATTGGGATGAATCACGGAGTGAGTATGAAGCAGAGGTTGTTG CTTCAAATGGACATCACAACTACTTTGAGAAGAAGGATGTAAGTGATCAATCTACTATCAGAGACGAAAATAGAAAGATAAGAGAGGAGTTGACTAATAT TGACTCTGCAAAGAGAGACTTGGAAGCGAGGCTCCAGTTAGCTTCTGATAAGAGTGAGCCCTTGATGAATCAACTTAAGGAATCAGAGAAAACCATTGAG AGCTTGCAAACAGATTTAGAAACTTTGAGAGGTTCGAAGGCAATGTTTGAGAGCCAAATTGAAAACCATAAGTTGATGAAAGAAGATGTTGATACAGAGC TTACAGAGGCCAAAGTTGAATTAAATAAGGCTCACCAAAAATTATCTACCTTGGAAATGGAACTTGAGAACAGGAAGAGTTGCTGTGAAGAATTGGAAGC CACATGTCTTGAACTACAGATCCAACTTGAAAGTATGACGAAAAATGAAATCCCGAACTCTGAAGTCCATCAGGATGAGAGCCAACTCCGGACTGATTGG GAGATAACGGCTGCTTCAGAAAAGTTGGCTGAGTGCCAAGAGACAATTCTAAACCTAGGGAAGCAGTTAAAGGCATTGGCTTCGCCAAGCGAAGCAGCCC TGTTTGACAAGGTCATCTCTACGTCCACTGACACAAATACGATCTCTGTCACCACTTCCACAAGCACAGCCTTGACACCCAAGAACAAGGTACTGATCCA GAGGTCCTCTTTGCTAGATCAGATGCTAGCAGAGGACACCGATAAAGTGAAGGACACCAAATCAGTCAAGTGCAAAGAAAGCGATAGCAATACCAGTTCC ACCGTCATTTCCAATAAGGTGATCGAGCCTCTTGAGAAGATACTCGTTTTGAATGGAATTAAACACCAGGATGATGGTATTGCAACTAATTCTTTGGCCA TTGTACCTAGCAAGAAAAGGGGAGGTGTAAATTTGTGGAGAAAGTTTCTATGGAGAAAGAAGAAATCAAACATCAAGAAACCATCCTTTCCATTTGCCCC GTAA
AA sequence Show only first row Show all	>Potri.005G140300.2 pacid=42805096 polypeptide=Potri.005G140300.2.p locus=Potri.005G140300 ID=Potri.005G140300.2.v4.1 annot-version=v4.1 MDHKTWLWRKKSTDKIVAATDPKVELSSKEEEIQTLLDNKAELENDLKILSERLSSALSECNAKDDLAKKQAKLAMEAMAVQEKAEAKALSLKQELDEAL QQRAAGEERLTHLDAALKECMQQLRFVREEQERRIHDAVMKTSNEFEKSQMILEEKLADTGKMLAKIGIEKANLSKAFLEKERLVEDLSKQKAQVEADFI ALMGRLESTEKDSASLKYEVRVLDKELEIRNEEREFNRRTADSSHKQHLESVKRIAKLEAECQRLRLLVRKRLPGPAAVAKMKSEVEILGRDSVEVSRRR SNCSPIGLVVDSAVGNSAESPSKKINFLTEQLCAMEEENKTLKEALDKKTNELQVSRTMYARTASKLSQVESLFDELPKGQITLERSRSVRMPQELSLAS MSEIGSDDKVSSAESWASALISEMEHFKQGKQKGSPTNRTIGVSDISLMDDFAEMERLAIVSVDKQLESPHASSDNVNAIGQEIIPVSESRSGVSNQVIK SKDKASGWLHDILKVVLEQNRVTQRKPCEILEDVRIALANINHASPAEYVDTRQSSTHSNGLNSPHVGGYISWKPMYSVTDSPGGVTEAEALSMDKSHQQ VQSDLGKSLCKIIELIEGIAFSYADYGNSETLTRKDGDFFPFKNTETPPGYMVRVLQWKTSELCAVLQEFVHACYDLLNGKSDVNMFAQELGSALDWIMN HCFSIQDVSSMRDAVKKHFDWDESRSEYEAEVVASNGHHNYFEKKDVSDQSTIRDENRKIREELTNIDSAKRDLEARLQLASDKSEPLMNQLKESEKTIE SLQTDLETLRGSKAMFESQIENHKLMKEDVDTELTEAKVELNKAHQKLSTLEMELENRKSCCEELEATCLELQIQLESMTKNEIPNSEVHQDESQLRTDW EITAASEKLAECQETILNLGKQLKALASPSEAALFDKVISTSTDTNTISVTTSTSTALTPKNKVLIQRSSLLDQMLAEDTDKVKDTKSVKCKESDSNTSS TVISNKVIEPLEKILVLNGIKHQDDGIATNSLAIVPSKKRGGVNLWRKFLWRKKKSNIKKPSFPFAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	0	1
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	2.44	0.9212
AT3G54290			unknown protein		Potri.008G019700 [exp]	4.58	0.9130
AT5G58000			Reticulon family protein (.1)		Potri.018G108200 [exp]	5.65	0.9154
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	8.12	0.9133
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	10.95	0.9147
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	12.40	0.9019
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	12.72	0.9032
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	12.84	0.9169
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	13.71	0.9192	Pt-NPSN11.1
AT3G52500			Eukaryotic aspartyl protease f...		Potri.006G204700 [exp]	15.09	0.8676

Compare expression of checked genes

Potri.005G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.