Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36910 300 / 6e-104 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 259 / 2e-87 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 39 / 0.001 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046400 [exp] 370 / 3e-131 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 284 / 4e-97 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 261 / 3e-88 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 42 / 0.0001 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004992 [exp] 253 / 1e-84 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10002834 [exp] 243 / 8e-81 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 215 / 4e-70 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 147 / 5e-43 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.005G140800.1 pacid=42802680 polypeptide=Potri.005G140800.1.p locus=Potri.005G140800 ID=Potri.005G140800.1.v4.1 annot-version=v4.1 ATGGACGCTTCGATTCTACACTCCGACTCTCTCTCCCGCACACGCCTGTGCGTCACCACCACCACAGCATCTGCTGTTTCCCTCACTCACCAGATGCCCT GCCTTCTCTTTTCTACTCCTGGACGGAAACTTGTCTCGTTATCCTCCATTTCTTGGCCTCGCAGGTCTCCTTCCCTTATAGCAGCTGCAAGTAGTGGCAC CTTGATGGCCAATTCTCCAAAAAGTGGGGTATATACAGTTGGTGATTTTATGACAAGGAAAGAAGATTTGCATGTGGTAAAACCGACAACAACTGTAAAT GAAGCACTGGAGACTCTTGTAGAACGTAGAATTACTGGTTTTCCTGTGATTGATGATGATTGGAAACTGGTTGGTCTTGTGTCAGATTATGACTTGTTAG CATTGGACTCCATATCAGGTGGTGGAAGAACCGAAACTAACATGTTTCCTGAAGTCGACAGCACTTGGAAAACTTTCAACGAGGTACAAATGTTGCTCAA TAAAACCAATGGGAAGGTTGTTGGTGACTTGATGACACCAGCACCAGTTGTTGTTCGTGAAACCACCAATCTTGAGGATTCTGTAAGATTATTACTTGAG ACAAAATACCGTAGACTTCCAGTTGTGGATGCCGACGGCAAGCTTGTTGGAATTATCACAAGAGGAAATGTTGTAAGAGCTGCTTTGCATATAAAACATG CCATGGAAAGGAAAGCGTAG
AA sequence Show only first row Show all	>Potri.005G140800.1 pacid=42802680 polypeptide=Potri.005G140800.1.p locus=Potri.005G140800 ID=Potri.005G140800.1.v4.1 annot-version=v4.1 MDASILHSDSLSRTRLCVTTTTASAVSLTHQMPCLLFSTPGRKLVSLSSISWPRRSPSLIAAASSGTLMANSPKSGVYTVGDFMTRKEDLHVVKPTTTVN EALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRTETNMFPEVDSTWKTFNEVQMLLNKTNGKVVGDLMTPAPVVVRETTNLEDSVRLLLE TKYRRLPVVDADGKLVGIITRGNVVRAALHIKHAMERKA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Potri.005G140800 [exp]	0	1
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	3.60	0.9657
AT1G59840		CCB4	cofactor assembly of complex C...		Potri.008G191900 [exp]	6.92	0.9557
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	8.83	0.9630	NHD1.2
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	11.74	0.9609	APG2.1
AT4G13200			unknown protein		Potri.002G241000 [exp]	13.07	0.9487
AT3G61550			RING/U-box superfamily protein...		Potri.002G165200 [exp]	13.41	0.9461
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	14.49	0.9583
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	14.86	0.9489
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	16.24	0.9585
AT5G08340			Nucleotidylyl transferase supe...		Potri.007G075500 [exp]	16.43	0.9398

Compare expression of checked genes

Potri.005G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.