Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67200 733 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 625 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 576 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 402 / 2e-131 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 368 / 2e-118 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 288 / 1e-87 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 282 / 1e-85 RKL1 receptor-like kinase 1 (.1) AT5G05160 271 / 1e-81 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G08680 254 / 3e-75 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 250 / 9e-74 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046900 [exp] 1033 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 646 / 0 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 350 / 2e-111 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 315 / 1e-97 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.018G074300 [exp] 312 / 7e-97 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 286 / 3e-87 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 285 / 1e-86 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G144900 [exp] 270 / 5e-81 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 261 / 7e-78 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036426 [exp] 761 / 0 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10041101 [exp] 751 / 0 AT5G67200 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018733 [exp] 615 / 0 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 610 / 0 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029075 [exp] 427 / 1e-140 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 345 / 6e-109 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035138 [exp] 294 / 2e-89 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10034446 [exp] 280 / 2e-84 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 279 / 2e-84 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 268 / 5e-80 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G141200.1 pacid=42804047 polypeptide=Potri.005G141200.1.p locus=Potri.005G141200 ID=Potri.005G141200.1.v4.1 annot-version=v4.1 ATGAAAGAAACACAAACACCAACACAACTCACAACATTCTCCACTTTCCACTTCACAATGTCACTAACCAACCCAATCCTCCTCCTCCTCCTCCTCTCTT TCACCACCCTCACCACCAGCCAACTTGAGCAAACAACAGACCGTCTCCCACCAGACGTAGTTTCCATTCTCTCTTTCAAATCCAAAGCTGACTTAGACAA CAAACTCTTCTACACACTTAACGAACGTTTTGAATACTGTCAATGGCAAGGCATCAAATGTGCTCAAGGCCGTGTTGTCCGTGTTGCCCTTCAATCCTCG GGTCTGCGTGGCACTTTCCCTCCCTTCTCTCTTTCCTGGCTCGACCAACTTCGTGTGCTTTCTCTTCAAAACAACACTCTATCAGGTCCAATACCCGATT TGTCCCCACTTTTTAACTTAAAATCTCTCATTTTAAACCATAACTCGTTCTGTGGTTATTTCCCTCCTTCCATTCTATTACTCCATAGATTAACAATTCT TGACCTTTCTTACAACAATCTCAACGGACCAATTCCTGTGAACTTATCTTCTTTAGACCGATTGAACTCGCTTAAACTCGAGTTTAATCAGTTCAACGGG ACTGTCCCTTCGTTAGACCTTGGACTTCTTTTTTTCTTTAATGTTTCTGGTAATAACCTTACCGGCCCGATCCCTGTGACCCCTACATTGTCACGTTTTG ACACTTCTTCTTTCTCCTTAAATCCTGATCTTTGCGGAGAGATTATTAACAAGTCATGTAAGCCACGGTCTCCGTTCCTTGACTCATCAGCTTCTCCAAA TGCTATTACGCCAGCAGGAGTACCGTTCGGACAAAGCGCTCAAGCTCAAGGTGGGGTTGTAGTATCTATAACTCCGCCTTCGAAGCAAAAATATAATAGA AGTAGTGTTGTTTTAGGATTTACTATTGGGGTTTCGCTTTTAGTACTTTCTTTGCTGTGCATTGGTTTTCTTCTGGTCAAGAAACAGAAGAAAGAAAGAC GAGTTGAAGAGAAAGAACAAGCAATGACCGGGACGAGTTCTCCGGTGAGGATTCATTCCAAACCTGCAATGCAAAGTGAAGTTGTAGAGAAGGGTCATGA GACTATAAATACGGAAGCAAAAGAAGGGCTGGTTCAGCAAGTTAGGAGAGCAGAGAGGAGTGGGAGTTTAGTGTTTTGTGGAGGGAAAGCACAGGTTTAT ACATTAGAGCAGCTAATGAGGGCATCCGCTGAGTTGCTAGGGAGGGGTACGATTGGAACTACATATAAAGCTGTTCTTGATAATCAATTGATTGTCACAG TGAAACGGCTTGATGCTGGTAAGACTGCAATAACTAGTAGTGATGTGTTTGAGAGGCATATGGATGTTGTAGGTGAGCTTAGACACCTAAATTTGGTGCC AATCGCTGCTTATTTTCAAGCTAAAGGAGAGAGGCTTGTTCTCTATGATTATCAACCCAATGGCAGTCTCTTCAATCTCATTCATGGTTCAAGATCAACA AGGGCGAAGCCACTTCATTGGACATCATGCTTAAAGATAGCAGAAGATGTGGCAGAGGGTCTTGCCTACATCCACCAAATGTCGAATCTTGTCCATGGCA ACCTGAAATCCGCCAATGTCCTCCTTGGAGCTGATTTTGAGGCCTGCATCACAGATTACAGCCTTGCCTTGCTTGCAGACACTTATTCTAGTGAAGATCC TGATTCTGCAGCATGTAAAGCACCTGAGACTCGCAAGTCAAGCCATCAGGCCACTGCCAAGTCTGATGTCTATGCATTTGGTGTCCTATTACTGGAGCTT TTGACAGGTAAACATCCATCACAGCATCCATACCTTGTGCCCGCTGATATGTTGGACTGGGTCAGAGCAGTGAGAGATGATGGTGGCGGGGATGACAACC ACCTTGGAATGATTACTGAACTTGCTTGCATTTGTCGCCTGACCTCACCAGAACAGAGACCGGCAGCGTGGCAAGTGTTAAAGATGATACAAGAGATAAA GGACTGTGTGATGGTGGAAGATAAGGCAGCTGTTGGAAATTCGTAG
AA sequence Show only first row Show all	>Potri.005G141200.1 pacid=42804047 polypeptide=Potri.005G141200.1.p locus=Potri.005G141200 ID=Potri.005G141200.1.v4.1 annot-version=v4.1 MKETQTPTQLTTFSTFHFTMSLTNPILLLLLLSFTTLTTSQLEQTTDRLPPDVVSILSFKSKADLDNKLFYTLNERFEYCQWQGIKCAQGRVVRVALQSS GLRGTFPPFSLSWLDQLRVLSLQNNTLSGPIPDLSPLFNLKSLILNHNSFCGYFPPSILLLHRLTILDLSYNNLNGPIPVNLSSLDRLNSLKLEFNQFNG TVPSLDLGLLFFFNVSGNNLTGPIPVTPTLSRFDTSSFSLNPDLCGEIINKSCKPRSPFLDSSASPNAITPAGVPFGQSAQAQGGVVVSITPPSKQKYNR SSVVLGFTIGVSLLVLSLLCIGFLLVKKQKKERRVEEKEQAMTGTSSPVRIHSKPAMQSEVVEKGHETINTEAKEGLVQQVRRAERSGSLVFCGGKAQVY TLEQLMRASAELLGRGTIGTTYKAVLDNQLIVTVKRLDAGKTAITSSDVFERHMDVVGELRHLNLVPIAAYFQAKGERLVLYDYQPNGSLFNLIHGSRST RAKPLHWTSCLKIAEDVAEGLAYIHQMSNLVHGNLKSANVLLGADFEACITDYSLALLADTYSSEDPDSAACKAPETRKSSHQATAKSDVYAFGVLLLEL LTGKHPSQHPYLVPADMLDWVRAVRDDGGGDDNHLGMITELACICRLTSPEQRPAAWQVLKMIQEIKDCVMVEDKAAVGNS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	0	1
AT3G17365			S-adenosyl-L-methionine-depend...		Potri.010G153200 [exp]	1.73	0.9021
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	3.74	0.8893
AT3G48200			unknown protein		Potri.012G087400 [exp]	4.00	0.8800
AT5G59305			unknown protein		Potri.001G237700 [exp]	8.48	0.8647
AT4G15790			unknown protein		Potri.008G207500 [exp]	11.74	0.8870
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	16.12	0.8861	CYP51.2
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.007G052600 [exp]	17.14	0.8807
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	17.20	0.8403
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	18.33	0.8558
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	18.43	0.8650

Compare expression of checked genes

Potri.005G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.