Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36880 438 / 1e-153 CP1 cysteine proteinase1 (.1) AT1G47128 439 / 1e-152 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 434 / 6e-151 Granulin repeat cysteine protease family protein (.1) AT3G19390 418 / 1e-144 Granulin repeat cysteine protease family protein (.1) AT3G19400 399 / 1e-138 Cysteine proteinases superfamily protein (.1.2) AT4G23520 384 / 9e-133 Cysteine proteinases superfamily protein (.1) AT4G35350 363 / 2e-124 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 350 / 2e-119 XCP2 xylem cysteine peptidase 2 (.1) AT4G11320 343 / 2e-116 Papain family cysteine protease (.1) AT4G11310 343 / 2e-116 RD21A, RD21 Papain family cysteine protease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047600 [exp] 655 / 0 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 473 / 3e-166 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 466 / 2e-163 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.001G302100 [exp] 460 / 8e-161 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.004G207600 [exp] 366 / 1e-125 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.002G005700 [exp] 353 / 9e-121 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.005G256000 [exp] 352 / 3e-120 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.015G087400 [exp] 341 / 7e-116 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.012G090900 [exp] 335 / 2e-113 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024801 [exp] 449 / 1e-156 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 449 / 2e-156 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 436 / 2e-151 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 436 / 2e-151 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 348 / 3e-118 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10013204 [exp] 343 / 2e-116 AT1G20850 509 / 0.0 xylem cysteine peptidase 2 (.1) Lus10030722 [exp] 337 / 3e-114 AT4G35350 511 / 0.0 xylem cysteine peptidase 1 (.1.2) Lus10029649 [exp] 330 / 1e-111 AT5G45890 386 / 2e-134 senescence-associated gene 12 (.1) Lus10029658 [exp] 327 / 2e-110 AT5G45890 383 / 4e-133 senescence-associated gene 12 (.1) Lus10026362 [exp] 327 / 2e-110 AT5G45890 396 / 2e-138 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.005G141600.2 pacid=42802328 polypeptide=Potri.005G141600.2.p locus=Potri.005G141600 ID=Potri.005G141600.2.v4.1 annot-version=v4.1 ATGGCGCTTGCCATATCAGCCCTTCTCTTCCTTCTCTTCACCATGTCATCTGCCTTGGACATGTCAATCCTTACCTCTAATGACAATCAACTAAACCATG ATCGATCAAGCTGGAGAAGCGATGATGAGGTGATGAGTATGTACAAATGGTGGCTTGCAAAGCATGGTAAAGCATACAACGGGCTAGGAGAGGAAGCAGA GAGGTTTGAAATCTTTAAGAATAATTTGAGGTTCATTGATGAACATAACTCCCAAAACCATACGTACAAAGTTGGGTTGACTAAGTTTGCAGATCTTACC AATGAAGAGTACCGTGCCATGTTTCTGGGCACGAGGAGTGACGCTAAGCGTAGATTAATGAAGTCTAAAAGCCCGAGTGAAAGATATGCTTTCAAGGCTG GTGACAAGCTGCCGGAATCCGTGGATTGGAGAGCAAAAGGAGCAGTTAACCCGATCAAAGATCAAGGAAGTTGTGGTAGTTGCTGGGCTTTTTCAACAGT TGCTGCTGTGGAAGGAATAAACCAGATAGTAACGGGGGAGTTAATCTCTCTATCAGAGCAAGAACTTGTAGATTGTGACAGGACCTATAACGCAGGCTGC AATGGAGGCCTCATGGACTATGCATTCCAATTCATTATCAATAACGGCGGCCTGGACACCGAAAAGGACTATCCGTACGTAGGAGATGATGATAAATGTG ACAAAGACAAGATGAAAACTAAGGCTGTTAGCATTGATGGGTTTGAGGATGTTTTGCCGTACGATGAGAAAGCATTACAGAAAGCTGTGGCTCATCAGCC AGTTAGCGTCGCCATTGAAGCCAGTGGCATGGCTTTACAATTCTACCAGTCTGGAGTGTTCACCGGTGAATGTGGGACAGCCCTAGACCATGGTGTGGTT GTTGTTGGATATGCCTCGGAGAATGGCTTGGATTACTGGCTTGTTAGGAACTCATGGGGCACAGAATGGGGGGAGCATGGATACATCAAGATGCAGCGTA ACGTCGGCGACACATACACTGGCAGATGTGGAATTGCAATGGAATCTTCTTACCCAGTCAAGAATGGCGAGAACACTGCTAAACCTAACTTGGCTGAAGC AAAACAAGAAGGGAAGGTGATTGAAGGTGTAAAGCTGGATGATTGGTGA
AA sequence Show only first row Show all	>Potri.005G141600.2 pacid=42802328 polypeptide=Potri.005G141600.2.p locus=Potri.005G141600 ID=Potri.005G141600.2.v4.1 annot-version=v4.1 MALAISALLFLLFTMSSALDMSILTSNDNQLNHDRSSWRSDDEVMSMYKWWLAKHGKAYNGLGEEAERFEIFKNNLRFIDEHNSQNHTYKVGLTKFADLT NEEYRAMFLGTRSDAKRRLMKSKSPSERYAFKAGDKLPESVDWRAKGAVNPIKDQGSCGSCWAFSTVAAVEGINQIVTGELISLSEQELVDCDRTYNAGC NGGLMDYAFQFIINNGGLDTEKDYPYVGDDDKCDKDKMKTKAVSIDGFEDVLPYDEKALQKAVAHQPVSVAIEASGMALQFYQSGVFTGECGTALDHGVV VVGYASENGLDYWLVRNSWGTEWGEHGYIKMQRNVGDTYTGRCGIAMESSYPVKNGENTAKPNLAEAKQEGKVIEGVKLDDW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36880		CP1	cysteine proteinase1 (.1)		Potri.005G141600 [exp]	0	1
AT1G67570			Protein of unknown function (D...		Potri.015G092200 [exp]	2.44	0.7070
AT3G01860			unknown protein		Potri.008G176300 [exp]	4.00	0.7719
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	6.00	0.7425
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	10.39	0.7440
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Potri.010G112900 [exp]	10.95	0.6557
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	12.48	0.7181	AUX1.1
AT1G12020			unknown protein		Potri.004G001800 [exp]	12.96	0.6477
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	17.74	0.7078
AT1G03670			ankyrin repeat family protein ...		Potri.011G133300 [exp]	20.83	0.7067
					Potri.001G121350 [exp]	24.00	0.7024

Compare expression of checked genes

Potri.005G141600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.