Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SKIP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67250 569 / 0 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT1G47056 522 / 0 VFB1 VIER F-box proteine 1 (.1) AT3G50080 509 / 2e-177 VFB2 VIER F-box proteine 2 (.1) AT4G07400 507 / 5e-176 VFB3 VIER F-box proteine 3 (.1) AT4G15475 105 / 1e-23 F-box/RNI-like superfamily protein (.1) AT2G25490 84 / 5e-17 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 75 / 3e-14 RNI-like superfamily protein (.1) AT1G12820 74 / 1e-13 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G07550 71 / 4e-13 RNI-like superfamily protein (.1.2) AT3G26810 71 / 6e-13 AFB2 auxin signaling F-box 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048101 [exp] 871 / 0 AT5G67250 581 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.014G023500 [exp] 556 / 0 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.002G123100 [exp] 549 / 0 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.006G081600 [exp] 305 / 5e-97 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1) Potri.017G056400 [exp] 83 / 5e-17 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.004G033900 [exp] 83 / 1e-16 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.018G027700 [exp] 81 / 5e-16 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 80 / 1e-15 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.011G042400 [exp] 79 / 3e-15 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011506 [exp] 567 / 0 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10018737 [exp] 548 / 0 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10019319 [exp] 500 / 4e-174 AT5G67250 505 / 3e-176 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Lus10024798 [exp] 147 / 2e-41 AT1G47056 179 / 4e-54 VIER F-box proteine 1 (.1) Lus10012764 [exp] 114 / 2e-26 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 96 / 2e-20 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10024799 [exp] 84 / 2e-19 AT4G07400 93 / 3e-23 VIER F-box proteine 3 (.1) Lus10002913 [exp] 91 / 4e-19 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10041087 [exp] 87 / 4e-18 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10006738 [exp] 82 / 5e-16 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G141800.1 pacid=42804420 polypeptide=Potri.005G141800.1.p locus=Potri.005G141800 ID=Potri.005G141800.1.v4.1 annot-version=v4.1 ATGGGCCAATCATCTTCCACCACTAATTATTCAATCAACCGATTCTTAACCCCCGCGACCATCTTATCCGAATCCTCAGATTTAGCCGACGAAATCAATA TCGGACCTCTCAGAGACCACACGGAGGACATACCAGACGATTGTTTAGCTTACATATTCCAGCTTCTCAAAGCCGGTGACCGCAAAAGCTCATCCCTTGT CTGCAAACGATGGCTACGCGTCGATGCTCAAAGTCGCCGCCGGCTTTCTCTGATTGCGCAATCGGAGATTATTTCCTATGTACCTACGATCTTTACTCGA TTCGATTCGGTTGCTAAACTATCTCTCCGGTGTGGTCGGAAATCTGTTAGCTTAAATGACGATGCGTTGCTGATGATTTCTATCCGGTGCGAGAATCTCA CGCGACTCAAGCTCCGTGGATGTCGTGAACTGACTGAGTTAGGTATGGCTAACTTTGCTAAAAATTGTAAGAACCTGACGAAATTTTCGTGCGGTTCGTG CAATTTCGGGGTTGAAGGAATTAATTGGATGTTAAAGTATTGTACTGATCTTGAAGAGTTGACTATTAAGCGGCTTAGAAGTGTCAATAATGGGAACGAA TTGGTCATCGTTCCCGGCGCGGCCGCATTAAGTTTAAAATCCATTTGTTTGAAGGAGTTGGTTAATGGGCAATGCTTTGAACCGCTTGTGGTTGAATGCA AGAAGCTTAAGACCTTGAAAGTGATTCGTTGTTTAGGTGATTGGGATAGTGTGCTTGTAAAAATTGGGAATGGAAATGGGATTTTGAGTGATGTTCACTT AGAGAGGTTGCAAGTGAGTGATATTGGACTTGGAGCAATTGCCAAATGTGTAAATATAGATAGTTTGCATATTGTGAGGAATCCTGACTGTTCAAATTTA GGGCTTGTTTCTGTGGCAGAGAATTGTAGGAAGTTGAGGAAGCTTCATATTGATGGGTGGAATATTAATCGGATTGGAGATGAGGGTTTAATAGCTGTAG CGAAACAGTGCCCGGAGTTACAAGAGCTTGTTTTGATTTGTGTTCATGTTACGCATTTGAGTATGGCAGCAATTGCTGTTAACTGTCAGAGATTGGAGCG ATTGGCATTGTGCGGGATTGGAGCTATTGGTGATGCGGAGATTGCTTGCATTGCAGCTAAATGTGTGGAGTTAAAGAAGCTTTGCATCAAGGGCTGTGCT ATTTCTGATACTGCCATTGAAGCTCTTGCTTGGGGATGTCCGAATTTGGTTAAGGTTAAGATCAAGAAATGCAGAGGAGTTAGTAGTGAAGTTGTGAATT GGTTGTTGCGGCGCAAGGGGTCACTTGTTGTTAGTTTCGATGCTGCTGAAAGTGAAGGGTTGGATGCCAGTGGTAGTGATGTTGGAGGTCAAGAAAGTGG TGTGGAATTCCCGGTGATGGGTGACCGAGTAGTTGTCGGTGATGGCCCTTCAGTCAGCATTGGGAGATTGGCTTTGCTTAGGGCGAAGCTAGGGTTTTTT GCCAGCAGGAATTTAGTGCCCTGTGCGTTTAACAAGTCATCAAATCACGGGGATAGTTCAAGTAGCAATCTGTGA
AA sequence Show only first row Show all	>Potri.005G141800.1 pacid=42804420 polypeptide=Potri.005G141800.1.p locus=Potri.005G141800 ID=Potri.005G141800.1.v4.1 annot-version=v4.1 MGQSSSTTNYSINRFLTPATILSESSDLADEINIGPLRDHTEDIPDDCLAYIFQLLKAGDRKSSSLVCKRWLRVDAQSRRRLSLIAQSEIISYVPTIFTR FDSVAKLSLRCGRKSVSLNDDALLMISIRCENLTRLKLRGCRELTELGMANFAKNCKNLTKFSCGSCNFGVEGINWMLKYCTDLEELTIKRLRSVNNGNE LVIVPGAAALSLKSICLKELVNGQCFEPLVVECKKLKTLKVIRCLGDWDSVLVKIGNGNGILSDVHLERLQVSDIGLGAIAKCVNIDSLHIVRNPDCSNL GLVSVAENCRKLRKLHIDGWNINRIGDEGLIAVAKQCPELQELVLICVHVTHLSMAAIAVNCQRLERLALCGIGAIGDAEIACIAAKCVELKKLCIKGCA ISDTAIEALAWGCPNLVKVKIKKCRGVSSEVVNWLLRRKGSLVVSFDAAESEGLDASGSDVGGQESGVEFPVMGDRVVVGDGPSVSIGRLALLRAKLGFF ASRNLVPCAFNKSSNHGDSSSSNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.005G141800 [exp]	0	1	SKIP2.2
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Potri.008G192600 [exp]	1.00	0.9347
AT2G27080			Late embryogenesis abundant (L...		Potri.009G158900 [exp]	3.16	0.9189
AT1G18740			Protein of unknown function (D...		Potri.005G192600 [exp]	3.46	0.9055
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Potri.007G048101 [exp]	4.24	0.9186
AT5G47850		CCR4	CRINKLY4 related 4 (.1)		Potri.019G078300 [exp]	5.65	0.8735
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Potri.001G235800 [exp]	7.07	0.8950
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	7.48	0.8816
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	11.74	0.7767
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.001G243300 [exp]	12.40	0.8542
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.001G110700 [exp]	14.73	0.8044	DREB69,Pt-DREB1.6

Compare expression of checked genes

Potri.005G141800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.