Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYCD3.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67260 327 / 1e-110 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 305 / 1e-101 CYCD3;3 CYCLIN D3;3 (.1) AT4G34160 295 / 6e-98 CYCD3;1 CYCLIN D3;1 (.1) AT2G22490 144 / 1e-39 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT1G70210 131 / 6e-35 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 119 / 8e-31 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 103 / 4e-25 CYCD4;2 cyclin d4;2 (.1) AT4G37630 87 / 6e-19 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 84 / 6e-18 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 78 / 8e-16 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048300 [exp] 593 / 0 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.001G301800 [exp] 318 / 2e-106 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.002G123000 [exp] 311 / 3e-104 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.009G097800 [exp] 310 / 6e-104 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.014G023000 [exp] 298 / 5e-99 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.002G103500 [exp] 153 / 3e-43 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 135 / 7e-37 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.010G095200 [exp] 129 / 2e-34 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.008G146600 [exp] 125 / 9e-33 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011507 [exp] 366 / 8e-126 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 357 / 2e-122 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10019825 [exp] 303 / 1e-100 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 284 / 3e-93 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10018739 [exp] 231 / 7e-73 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10024796 [exp] 227 / 1e-71 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10027874 [exp] 186 / 2e-54 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10002824 [exp] 129 / 1e-34 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1) Lus10029194 [exp] 126 / 3e-33 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 120 / 5e-31 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G141900.1 pacid=42804009 polypeptide=Potri.005G141900.1.p locus=Potri.005G141900 ID=Potri.005G141900.1.v4.1 annot-version=v4.1 ATGTCTTTCTTTCAACAACAAGAGACTCATAATCAAAGCCCAGCATTGGCTCTTGACGGGCTTTATTGTGAAGAGGATGGATTTGGAGAGGATTATTCTT GTAGTTTGGATGATGAAACTAGCCAGGTTTATGAACAAAATGTGAAAAAGGAGCAAAATTTATCTTCTGTTTTGCTTGAGCAAGACTTGTTTTGGGAAGA TAACGAGTTACTGTCTTTAATCTCCAAAGAGAAAGAGACCCATTTTGTTTTTGATAGTGTAGGATCTAGAGATGGATCTTTAATGGTGGTTCGTAGAGAG GCAGTTGAGTGGTTTTTGAGGGTAAAGGCACATTATGGGTTCAGTGCTTTGACTGGTGTTCTTGCTGTGAACTACTTTGATAGGTTCATTTCAAGTTCAA GGTTTCGAAGAGATAAGCCATGGATGGGTCAACTTGCTGCTGTGGCTTGTTTGTCTCTGGCTGCTAAAGTGGAGGAAACCCAAGTGCCACTTCTTTTAGA CTTGCAAGTGGAGGATGCAAAGTACGTTTTTGAAGCCAAGACCATAAAGAGAATGGAGCTGTGGGTGCTGTCAACTCTTCATTGGAGGATGAATCCTGTA ACCTCAATTTCTTTCTTTGATCACATTATAAGGAGACTTGGATTAAAGACCCACATGCATTGGGAGTTTTTATGGAGGTGTGAGCGTTTGCTTCTTTCTG TCATTTCTGATTCAAGGTTCATGAGTTATCTTCCTTCTATATTAGCTACTGCGACAATGTTGCATGTTATCAAGGAGGTTGAGCCACGTAATCAACTGCA ATACCAAACTCAGCTCATGGCTGTGCTAAAAACCAATGAGGATGAAGTGAATGAGTGTTACAAGCTCATTTTAGAGCAACAAGGCAGCCAAAACCAACGC CACAAGCGCAAGTACCTGTCCACACCCAGCAGCCCAAATGGTGTCATTGATGCAACTTTCAGCTCTGACAGCTCAAATGATTCGTGGGCTGTGGCATCAT CAATCTCATCATCATCATCAGTGCCTCAATTCAAAAGAAGCAGATCCCATGTTCAGCAGATGCGATTGCCTTCACTAAATCGTATGTGCGTGGATGTGCT TAGCAGTCCTCATTAG
AA sequence Show only first row Show all	>Potri.005G141900.1 pacid=42804009 polypeptide=Potri.005G141900.1.p locus=Potri.005G141900 ID=Potri.005G141900.1.v4.1 annot-version=v4.1 MSFFQQQETHNQSPALALDGLYCEEDGFGEDYSCSLDDETSQVYEQNVKKEQNLSSVLLEQDLFWEDNELLSLISKEKETHFVFDSVGSRDGSLMVVRRE AVEWFLRVKAHYGFSALTGVLAVNYFDRFISSSRFRRDKPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEDAKYVFEAKTIKRMELWVLSTLHWRMNPV TSISFFDHIIRRLGLKTHMHWEFLWRCERLLLSVISDSRFMSYLPSILATATMLHVIKEVEPRNQLQYQTQLMAVLKTNEDEVNECYKLILEQQGSQNQR HKRKYLSTPSSPNGVIDATFSSDSSNDSWAVASSISSSSSVPQFKRSRSHVQQMRLPSLNRMCVDVLSSPH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.005G141900 [exp]	0	1	CYCD3.4
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	2.00	0.8992
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	2.00	0.9258
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	2.82	0.9252
AT4G21895			DNA binding (.1)		Potri.004G017000 [exp]	5.47	0.8984
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.001G189400 [exp]	6.92	0.8933	DTA4.1
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	10.53	0.9077	Pt-FAH1.1
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.011G120100 [exp]	15.36	0.8128
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.002G135600 [exp]	15.87	0.8918
					Potri.006G056000 [exp]	16.12	0.8804
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G035100 [exp]	17.32	0.8772

Compare expression of checked genes

Potri.005G141900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.