Plant FIBer expression Database

Potri.005G142200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G67270 442 / 4e-157 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
AT3G47690 322 / 3e-110 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
AT5G62500 318 / 1e-108 ATEB1B end binding protein 1B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G048700
[exp]
634 / 0 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Potri.015G062900
[exp]
337 / 2e-116 AT5G62500 421 / 3e-150 end binding protein 1B (.1)
Potri.012G069400
[exp]
330 / 1e-113 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019316
[exp]
422 / 5e-149 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Lus10011508
[exp]
417 / 3e-147 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Lus10023606
[exp]
317 / 2e-108 AT5G62500 397 / 6e-141 end binding protein 1B (.1)
Lus10024235
[exp]
306 / 6e-104 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03271 EB1 EB1-like C-terminal motif
Representative CDS sequence
>Potri.005G142200.1 pacid=42805688 polypeptide=Potri.005G142200.1.p locus=Potri.005G142200 ID=Potri.005G142200.1.v4.1 annot-version=v4.1
ATGGCAAGCAACATCGGCATGATGGATTCGGCTTATTTCGTAGGCAGATCTGAGATCCTCTGTTGGATTAACTCCACTCTTCAACTCAATCTCTCCAAAG
TCGAAGAAGCATGCTCTGGTGCGGTGCACTGTCAGTTAATGGATTCGGTTCATCCAGGAATGGTGCCGATGCACAAAGTCAATTTCGACGCCAAAAACGA
GTACGAAATGATTCAAAACTATAAGGTCCTTCAAGATGTGTTTAACAAGCTGAAGATCACTAAGCATATAGAGGTGAGTAAGCTGGTGAAAGGCAGGCCG
CTTGATAACTTGGAGTTTATGCAGTGGATGAAGCGATATTGTGATTCTGTCAACGGAGGACTTGTCAATTACAATCCACTGGAAAGGAGAGAAGCTTGCA
AGGGAGGGAAAGAAGCAAGCAAGAAATGTCCACAGTCTCAAGCTTCAAGCAAGGGATCCACAGCTGCTCCCAAAGTTCAGTCCTCTCACAATGCTCGAAG
GAATGATGTGTCCTCTTCAAATCAATCTGTGAAGGCTTCTAAACCTTCTTGTCCAGTGCCTGCATATGATGAACAGATCACCGAGTTGAAGTTGTCAGTG
GATAGCCTTGAGAAGGAGAGGGACTTCTACTTTGCAAAGCTGAGAGATATTGAGATTTTGTGTCAGAGCCCTGGGATTGAAAACCTACCAGTTGTTGCAG
CGATGAAGAGAATCCTTTATTCTACTGACGATGATGCATCAGTATTGGCAGAAGCTCAAGCCATGGTGTCACTTCACCAGAAGGAAGCAGAGTACTTGAG
TCCCATTGCTGAGGTATCAACAGAGGAAAAGGAGAATTCCGATCCTCAAAAGAGAAAGAACATTGTCAATCTTGGTGTTGATGCTGTAGGCATCTCAACA
TTGTCACCGAGGCAAAGGCTTTCTGATGCTACAGATGTCCGTTGTAGTGGGTCACCCCTCATGACATACTGA
AA sequence
>Potri.005G142200.1 pacid=42805688 polypeptide=Potri.005G142200.1.p locus=Potri.005G142200 ID=Potri.005G142200.1.v4.1 annot-version=v4.1
MASNIGMMDSAYFVGRSEILCWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGMVPMHKVNFDAKNEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRP
LDNLEFMQWMKRYCDSVNGGLVNYNPLERREACKGGKEASKKCPQSQASSKGSTAAPKVQSSHNARRNDVSSSNQSVKASKPSCPVPAYDEQITELKLSV
DSLEKERDFYFAKLRDIEILCQSPGIENLPVVAAMKRILYSTDDDASVLAEAQAMVSLHQKEAEYLSPIAEVSTEEKENSDPQKRKNIVNLGVDAVGIST
LSPRQRLSDATDVRCSGSPLMTY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.005G142200
[exp]
0 1
AT4G15830 ARM repeat superfamily protein... Potri.008G221700
[exp]
2.64 0.9745
AT5G67270 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE EN... Potri.007G048700
[exp]
4.24 0.9619
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.016G033000
[exp]
4.24 0.9722
AT5G45700 Haloacid dehalogenase-like hyd... Potri.004G062900
[exp]
4.58 0.9668
AT4G13370 Plant protein of unknown funct... Potri.018G072500
[exp]
5.00 0.9689
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.009G040200
[exp]
5.19 0.9710
AT2G26760 CYCB1;4, CYC3 Cyclin B1;4 (.1) Potri.001G272000
[exp]
8.48 0.9677
AT2G17620 CYCB2;1 Cyclin B2;1 (.1) Potri.005G100000
[exp]
8.48 0.9610 Pt-CYCMS1.1
AT1G08560 KN, ATSYP111, S... KNOLLE, syntaxin of plants 11... Potri.013G053200
[exp]
8.94 0.9613 Pt-SYP111.1
AT5G06590 unknown protein Potri.016G064200
[exp]
9.16 0.9438

Potri.005G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.