Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37250 733 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 725 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 706 / 0 RLK receptor-like kinase (.1) AT4G34220 555 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G15300 518 / 8e-174 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 400 / 1e-128 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 232 / 9e-66 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 218 / 1e-60 Leucine-rich repeat protein kinase family protein (.1) AT1G66830 205 / 3e-56 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 199 / 2e-54 RLK902 receptor-like kinase 902 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G048800 [exp] 1172 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G300700 [exp] 683 / 0 AT4G34220 620 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 405 / 2e-130 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 305 / 1e-92 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 261 / 3e-76 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 228 / 2e-64 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 226 / 6e-63 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G095700 [exp] 223 / 9e-63 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 218 / 6e-61 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010263 [exp] 804 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 803 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 699 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 697 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014098 [exp] 600 / 0 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 331 / 1e-102 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 324 / 4e-100 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 286 / 2e-90 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10037006 [exp] 215 / 9e-60 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 209 / 1e-57 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G142300.1 pacid=42804746 polypeptide=Potri.005G142300.1.p locus=Potri.005G142300 ID=Potri.005G142300.1.v4.1 annot-version=v4.1 ATGAGCTTCCAAGGTGTTCAACTCCATTTATGGTGGAGAATTCTTGCCCTTGGAATTTTACTTCTTGTAGTTCAATCTTTTGGGCTCAACACAGATGGTG TTCTCTTGCTTTCTTTCAAGTACTCTATCCTTGATGACCCTCTCTCTGTGCTTCAAAGCTGGAACCACAGTGACCAGACTCCATGTTCATGGAACGGAGT TACCTGTGGATCTCCTGGAACAGACAATACTTATTACTCTCGTGTCACAGGCTTATCTCTTCCAAATTGTCAGCTTCTTGGAACAATTCCAGCCACTCTA GGCTTGATTCAACACCTCCAAAACCTTGATCTATCCGACAATTCTCTTAACGGATCCTTGCCTGTTTCACTTCTCAATGCAACCCAACTTCGGTTTCTTG ATTTGTCTAGTAATATGATCTCTGGTCAGTTGCCAGAGACCATAGGACGGTTACAGAATCTTGAACTTCTTAACCTCTCTGACAATGTCTTAGCGGGAAC TTTGCCTGCCAACCTCGCTGCTCTCCATAATCTAACTGTTGTTTATTTAAAGAAGAATAATTTCTCTGGTGATCTTCCTAGCGGATTTCAAACCGTTCAG GTTTTAGATCTCTCTTCAAATCTTCTCAATGGATCTCTACCTCAAGATTTTGGTGGTAACAATCTTCACTACTTAAACATCTCTTACAACAAGCTCTCAG GTCCAATTCCACAAGAATTCGCCAACGAAATCCCATCTAACACTACTATTGATCTATCATTCAACAATCTGACGGGAGAAATTCCGGAATCTAGTCTTTT CTTGAATCAAGAAAGGAGTGCTTTCGCCGGAAATCCTCATCTTTGCGGCCAGCCAACAAGAAATCAATGTCCAATTCCTTCTTCAGTATCTCCACTTCCG AATATATCTGCACCTACATCGCCTCCTGCAATTGCTGCAGTTCCAAGAATTATAGGCTCGAGTCCTGCAACTACTCGTCCAGGTGAAACAGCAACAGGGT CTGGACAAGACGAAGGTGGGCTTAGGCCAGGAACCATTGCAGGCATCATAGTAGGCGACATTGCAGGAGTTGCAGTTCTTGGTTTGGTTTTCTTCTATGT ATACCACTGTTTAAAGAAAAGAAAGCATGTTGAAACAAATATCAAGAACGAAGCCAACATCGCGAAGGATAGTTGGTCATCTTCATCTTCAGAGTCAAGA GGGTTCACAAGATGGGCATGTCTGCACAAGAGAGGAGAAAATGAAGAGGATTCTGGTTCCACAAGCACTGACAATGAAGCAGGCCCTCTTGATCACAGTC AAAGGCATACAGACCATCATGATCAAAACAAAGAAGGGACATTGGTGACTGTAGATGGTGAAAAGGAGCTTGAACTTGAAACTCTACTTAGAGCATCAGC TTACATATTAGGTGCTACTGGTTCTAGTATAACGTACAAGGCTGTTCTTGAAGATGGGACTTCATTTGCAGTTCGAAGAATTGGTGAAAACCATGTAGAA AGGTTCAGAGATTTCGAGACCCAAGTCCGTGTCATAGCCAAGTTGGTGCATCCAAATCTTGTTAGAATTCGTGGGTTCTATTGGGGCGTTGATGAGAAGC TCATTATCTACGATTTTGTCCCTAATGGCAGCCTTGCCAATGCTCGTTACAGGAAAGCGGGCTCATCGCCTTGTCATCTGCCATGGGAGGCCAGACTGAG GATTGCTAAAGGAGTGGCCCGTGGGCTGTCATTTCTCCATGAAAAGAAGCTTGTGCATGGAAATTTGAAGCCGAGTAATATACTCTTGGGTTCCGATATG GAGCCTAGAATCGGAGATTTTGGGCTGGAAAGGCTTATGACTGGTGACACCAGTTATAAAGGTGGAGGATCGGCTCGAAATTTTGGAAGCAACAGGTCTA TTGCGTCACGAGATAGCATTCAAGACTTTGGACCGGGTCCTAGCCCAAGCCCAAGTCCAAGCTCGATTGGAGGTTTATCGCCTTATCATGCTCCGGAGTC TCTTCGGAGTCTCAAGCCCAATCCGAAGTGGGATGTGTACGCCTTTGGGGTTATCTTGCTTGAGCTACTAACAGGAAAGGTTGTGGTTGTTGATGAGTTG GGCCAAGGAAGTAATGGGCTTGTAGTGGAAGACAAGGACCGGGCTATGAGGGTGGCTGATGTGGCGATTCGAGCTGACATGGAGGGTAAAGAGGATGCCT TGCTGGCTTGCTTCAAGCTAGGGTATAGTTGTGCCCTTCATGCTCCGCAGAAGAGGCCAACAATGAAAGAAGCCTTACAAGTCATTGAGAGATTTCCATC TTCAGCTGCGCCATATCCTTGA
AA sequence Show only first row Show all	>Potri.005G142300.1 pacid=42804746 polypeptide=Potri.005G142300.1.p locus=Potri.005G142300 ID=Potri.005G142300.1.v4.1 annot-version=v4.1 MSFQGVQLHLWWRILALGILLLVVQSFGLNTDGVLLLSFKYSILDDPLSVLQSWNHSDQTPCSWNGVTCGSPGTDNTYYSRVTGLSLPNCQLLGTIPATL GLIQHLQNLDLSDNSLNGSLPVSLLNATQLRFLDLSSNMISGQLPETIGRLQNLELLNLSDNVLAGTLPANLAALHNLTVVYLKKNNFSGDLPSGFQTVQ VLDLSSNLLNGSLPQDFGGNNLHYLNISYNKLSGPIPQEFANEIPSNTTIDLSFNNLTGEIPESSLFLNQERSAFAGNPHLCGQPTRNQCPIPSSVSPLP NISAPTSPPAIAAVPRIIGSSPATTRPGETATGSGQDEGGLRPGTIAGIIVGDIAGVAVLGLVFFYVYHCLKKRKHVETNIKNEANIAKDSWSSSSSESR GFTRWACLHKRGENEEDSGSTSTDNEAGPLDHSQRHTDHHDQNKEGTLVTVDGEKELELETLLRASAYILGATGSSITYKAVLEDGTSFAVRRIGENHVE RFRDFETQVRVIAKLVHPNLVRIRGFYWGVDEKLIIYDFVPNGSLANARYRKAGSSPCHLPWEARLRIAKGVARGLSFLHEKKLVHGNLKPSNILLGSDM EPRIGDFGLERLMTGDTSYKGGGSARNFGSNRSIASRDSIQDFGPGPSPSPSPSSIGGLSPYHAPESLRSLKPNPKWDVYAFGVILLELLTGKVVVVDEL GQGSNGLVVEDKDRAMRVADVAIRADMEGKEDALLACFKLGYSCALHAPQKRPTMKEALQVIERFPSSAAPYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37250			Leucine-rich repeat protein ki...		Potri.005G142300 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	2.00	0.9181
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	2.64	0.8993
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	2.82	0.9326
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	3.00	0.9078
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	4.47	0.9077
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	4.47	0.8957
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	4.47	0.9057
AT5G67620			unknown protein		Potri.007G005600 [exp]	6.48	0.8578
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	6.63	0.8770
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	6.70	0.8838

Compare expression of checked genes

Potri.005G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.