Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37270 92 / 2e-21 ATHMA1, HMA1 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049000 [exp] 96 / 8e-23 AT4G37270 1104 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019313 [exp] 86 / 2e-19 AT4G37270 1101 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1) Lus10011510 [exp] 81 / 2e-17 AT4G37270 1000 / 0.0 ARABIDOPSIS THALIANA HEAVY METAL ATPASE 1, heavy metal atpase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Potri.005G142732.1 pacid=42802864 polypeptide=Potri.005G142732.1.p locus=Potri.005G142732 ID=Potri.005G142732.1.v4.1 annot-version=v4.1 ATGACATTCCATTTTAGTTATGAGATGGCTATATTCATTTTGTTTATCTTGATTTATCAAGTAATGCTTGTTATGGAAGTTTTATCAAGTAAGCGAAAGC TTCAAAGGTGTCTGGATGAATTTGGTGAGCATTACAGCAAATTGGTTGTAGGTTTGGCAGTTGCCAACGCTCTACTTGAACCATTTCTTTTCGAGTGGCC ATTCATGATCACACCAGTTTGCAAAGGATCGGTCTACAGAGCACAAGACCTGATGGTGGCAGCATCACATTGTGCCTTGGCTGTAGCTCCATTGGCATAT GCCACTGCTATTAATTCCTGTGCAAGAAAGGAGGGGGTCTGGTCATGGTGGGAAGGTATTAATTATGCACCAGCTCTTGCTGCTGCAACTGTAGGGATTG TGCTTGCTCAACGGGCCACTGCAACTGCCATAGCTGTTGCTTGTGTCCTTACTGCTAAGGGATGCCATACCTGGTGTTCCATCCTGTATTTTATCAAGTC TCGCCAAAGAACCTCCCTGTTCGAGCAAAATGCAGCCCTCACATTAACCTCTATATTTCTGGCCTTCCTTCCATCCATTTTGAATTTCCTTCCTCTCTGG TCAACGGCTCTTCACTTAAGCTCTTCTCACATGCCTCGATTCTATATGCGCTCTGAGTGA
AA sequence Show only first row Show all	>Potri.005G142732.1 pacid=42802864 polypeptide=Potri.005G142732.1.p locus=Potri.005G142732 ID=Potri.005G142732.1.v4.1 annot-version=v4.1 MTFHFSYEMAIFILFILIYQVMLVMEVLSSKRKLQRCLDEFGEHYSKLVVGLAVANALLEPFLFEWPFMITPVCKGSVYRAQDLMVAASHCALAVAPLAY ATAINSCARKEGVWSWWEGINYAPALAAATVGIVLAQRATATAIAVACVLTAKGCHTWCSILYFIKSRQRTSLFEQNAALTLTSIFLAFLPSILNFLPLW STALHLSSSHMPRFYMRSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	0	1
AT3G15280			unknown protein		Potri.001G398300 [exp]	2.23	0.8126
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	4.47	0.7672
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	5.09	0.7861
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.002G195700 [exp]	10.67	0.7195
					Potri.006G276250 [exp]	10.95	0.7098
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Potri.010G222800 [exp]	11.61	0.7338
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	15.29	0.7539
AT1G09910			Rhamnogalacturonate lyase fami...		Potri.005G151500 [exp]	15.49	0.7391
AT5G09390			CD2-binding protein-related (....		Potri.001G205700 [exp]	18.00	0.6728
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	19.28	0.7019

Compare expression of checked genes

Potri.005G142732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.