Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24010 565 / 0 Protein kinase superfamily protein (.1) AT2G23200 525 / 5e-175 Protein kinase superfamily protein (.1) AT3G46290 518 / 4e-172 HERK1 hercules receptor kinase 1 (.1) AT5G59700 516 / 1e-171 Protein kinase superfamily protein (.1) AT4G39110 503 / 4e-166 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 498 / 3e-164 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 494 / 8e-163 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 491 / 7e-162 Protein kinase superfamily protein (.1) AT2G39360 471 / 2e-154 Protein kinase superfamily protein (.1) AT1G30570 461 / 4e-150 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G144100 [exp] 1494 / 0 AT5G24010 550 / 0.0 Protein kinase superfamily protein (.1) Potri.005G144200 [exp] 1474 / 0 AT5G24010 558 / 0.0 Protein kinase superfamily protein (.1) Potri.005G143200 [exp] 669 / 0 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.017G143049 [exp] 613 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 598 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 556 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 545 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G405500 [exp] 512 / 7e-170 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 507 / 6e-168 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012101 [exp] 637 / 0 AT2G23200 494 / 2e-162 Protein kinase superfamily protein (.1) Lus10010443 [exp] 629 / 0 AT2G23200 498 / 6e-164 Protein kinase superfamily protein (.1) Lus10028140 [exp] 556 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 553 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 542 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10039274 [exp] 531 / 2e-177 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10037887 [exp] 504 / 2e-166 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 477 / 2e-155 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10021632 [exp] 474 / 2e-154 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 473 / 7e-154 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.005G143700.3 pacid=42805177 polypeptide=Potri.005G143700.3.p locus=Potri.005G143700 ID=Potri.005G143700.3.v4.1 annot-version=v4.1 ATGGAGTTCACTCTTCATCCTCTCTTTCTTCTTCAATCTCTTCTTCTTCTTTCATCCTCAGTATCTTACAATCCATCGGTTAAGTACTTCATGAACTGTG GATCAGACACCGATGTCGATGATCTTGACGGTTCCCCGCGGACTTTTGTTGGTGATGAGAATTCTAACTCTTCCTTCTCTGTTGGAAAAAGCACATCTAT CCAAAATGAAAACCCTTTACCCGGCATATCACTCCTATATCATACAGCCAGAATCTATACGAAATTAACCCCGTATACGCTTGATATCACTCAAAATGGT TCCTACCTTGTCCGCCTTCATTTCTTTCCATTCAGCTTCAAAGGGACTCATCTTGCTGATGCTTTGTTCAATGTGTCTGCTTCAAATTTTTCACTTTTAA CAGATTTTAGAGTCCCGAACAGTACTACTGAGTTCCCAGTGATCAAGGAGTTCTTTCTCACGATAGCTGTAGGAAATTTCAACATCTACTTCAAACCAGC TGAAGAGACACCTTTTGCTTTCGTGAATGCCATTGAAGCCTTTCTTCTCCCACAAAATTTCTTCATGGATAATGCCTCTGCAACTCCTCCTTTACGGACC AAAGATGGAGCTCTTAGGACACGTTATAGGATCAATGTTGGAGGTCTAGAAGTTAACGATACCCTGTGGAGAAATTGGGTACCAGATGATGATTATCTAG CTTTTGGGGGTTCGGGTGCAAACCGTCCGTTTAGTGGTAAACTTCATCAGGCCAGTCAAGGGTTGACTGTCCAAGAAATTGCCCCTGATTCTGTGTACAC AACTTGCAAAGAAGCGAGTGTAGATAATAACGGGGCATCCAATTTTCCAAATATAACTTGGCGTTTTAACGTGAGCAAGAAAGCTAGGCATCTTGTTCGT CTGCACTTTTGTGACTTTATCAGTGTGTCACCAGGTACTGTGAAATTTGATCTCAATTTATCTACCAATTTGAGTCAAGTGATCGATCCTAATTCTGGTG GGTTTAGTGAAATGGCATCTCCATTTTTCCTCGATTTTATGGTTCCTTCTGATGATTCCGGATATATGAGTTTTAGTATAGCCCCAGGAAATAATTCTAT TCCGAAAGTTGCTTTTCTGAATGGATTGGAGATCATGGAGTTTGTGGGGAACACGACAATTGTAGTGCCTGTTGATGAACATGAGGCAAAAAACCATCTA GTTCTCATAATTGGTTCAGCTGGAGGTGTGGCTCTAGTCTTGGTTTTGATTTTATTATTCTCATTATGTTTGAGATTAAAGCGACCAAAGCCCGTAAAAG CTGAGTTTCTTTATGGAAAAGGGAGGTCTCCCAGTTGGATAACTGAAAAAACTGAAAATGCCTCCTCCAACGTTACTAATTTAAACCTCAAACTGAAGAT GTCTTTAGCTGAAATACTGGCTGCGACTCATAATTTCAATCCAAAGTTGTTGATTGGTGAGGGTGGGTTTGGCAAAGTTTATAAAGGAACTCTTGAGACT GGTATGAAGGTGGCTGTGAAACGAAGCGATTCAAGTCATGGCCAGGGTCTTCCAGAGTTCCGAACTGAGGTCATGGTCCTTTCAAAGATTCAACATCGGC ATCTTGTTTCCTTGGTTGGCTACTGCGATGAAGGATCGGAGATGATACTGGTTTTTGAATTCTTGGAAAAGGGGACTTTGAGGGACCACTTATACAGCAC GAAGGAGTGCTCAAAGAATCCATCTGCAAAAACTGAATTGAATTGGAAACAAAGGCTTGAAATCTGTATTGGCTCAGCAAAAGGTCTCCATTACCTCCAT ACTGGTCCTGATGGAGGAATCTTTCACCGTGATGTTAAGTCTACAAACATCTTACTTGATGAACATTACGTGGCCAAAGTAGCTGATTTCGGTCTTTCTC AACAAGGAATGCCTGATCCGGACCATATAAGCATGGGTTTTAAAGGTACTTTTGGTTATCTTGACCCTGAATATCTCAGAACTTTTCAGTTAACCAATAA ATCAGATGTGTATTCTTTTGGTGTGGTTCTTCTTGAAGTGCTTTGTGCTCGACTCCCTGTTGTAGACTCACAGCAGAAGGAAGAAATAAACTTAGCTGAA TGGGGGATGTTTTGGCAAAAGGAAGGGCAGCTTGAAAAGATTATCGATCCTCTACTGGCAGGTCACATCAACCCTAATTCGCTAAGAAAATTTGGTGAAA TAGCTGAGAAGTGTTTGAAGCCACAAGGAGCAGACAGGCCTAATATGATTGATGTGTGCTGGGATTTAGAATACGCAATGCAGCTTCAACAGACTGCAGT GCATAGAGAGGCACATGAGGACACCACCACAACAGGTGTTTCATCAGATTCAGCACTCCCAGTTATGCAGAACATGAGTTCTAATATGTTCCCAGTTGAT GATTTCTCAGATACAACAGATACTGTAATGTATCCCAATTAA
AA sequence Show only first row Show all	>Potri.005G143700.3 pacid=42805177 polypeptide=Potri.005G143700.3.p locus=Potri.005G143700 ID=Potri.005G143700.3.v4.1 annot-version=v4.1 MEFTLHPLFLLQSLLLLSSSVSYNPSVKYFMNCGSDTDVDDLDGSPRTFVGDENSNSSFSVGKSTSIQNENPLPGISLLYHTARIYTKLTPYTLDITQNG SYLVRLHFFPFSFKGTHLADALFNVSASNFSLLTDFRVPNSTTEFPVIKEFFLTIAVGNFNIYFKPAEETPFAFVNAIEAFLLPQNFFMDNASATPPLRT KDGALRTRYRINVGGLEVNDTLWRNWVPDDDYLAFGGSGANRPFSGKLHQASQGLTVQEIAPDSVYTTCKEASVDNNGASNFPNITWRFNVSKKARHLVR LHFCDFISVSPGTVKFDLNLSTNLSQVIDPNSGGFSEMASPFFLDFMVPSDDSGYMSFSIAPGNNSIPKVAFLNGLEIMEFVGNTTIVVPVDEHEAKNHL VLIIGSAGGVALVLVLILLFSLCLRLKRPKPVKAEFLYGKGRSPSWITEKTENASSNVTNLNLKLKMSLAEILAATHNFNPKLLIGEGGFGKVYKGTLET GMKVAVKRSDSSHGQGLPEFRTEVMVLSKIQHRHLVSLVGYCDEGSEMILVFEFLEKGTLRDHLYSTKECSKNPSAKTELNWKQRLEICIGSAKGLHYLH TGPDGGIFHRDVKSTNILLDEHYVAKVADFGLSQQGMPDPDHISMGFKGTFGYLDPEYLRTFQLTNKSDVYSFGVVLLEVLCARLPVVDSQQKEEINLAE WGMFWQKEGQLEKIIDPLLAGHINPNSLRKFGEIAEKCLKPQGADRPNMIDVCWDLEYAMQLQQTAVHREAHEDTTTTGVSSDSALPVMQNMSSNMFPVD DFSDTTDTVMYPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24010			Protein kinase superfamily pro...		Potri.005G143700 [exp]	0	1
AT5G24010			Protein kinase superfamily pro...		Potri.005G144200 [exp]	3.00	0.9756
AT5G24010			Protein kinase superfamily pro...		Potri.005G144100 [exp]	3.46	0.9731
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G212000 [exp]	4.47	0.9427
AT1G66920			Protein kinase superfamily pro...		Potri.017G117065 [exp]	5.91	0.9539
					Potri.017G111100 [exp]	6.48	0.9542
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	9.00	0.9431
AT5G38260			Protein kinase superfamily pro...		Potri.017G117120 [exp]	9.79	0.9466
AT1G66920			Protein kinase superfamily pro...		Potri.017G117285 [exp]	10.48	0.9416
AT3G47570			Leucine-rich repeat protein ki...		Potri.004G060100 [exp]	13.67	0.9185
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G026914 [exp]	15.09	0.9024

Compare expression of checked genes

Potri.005G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.