Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67320 671 / 0 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 114 / 5e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 110 / 1e-26 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 109 / 4e-25 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G25150 107 / 2e-24 TAF5 TBP-associated factor 5 (.1) AT5G52820 106 / 2e-24 WD-40 repeat family protein / notchless protein, putative (.1) AT2G26060 102 / 2e-23 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56130 98 / 3e-22 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 97 / 8e-21 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G32700 97 / 1e-20 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050100 [exp] 798 / 0 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G148500 [exp] 114 / 5e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 112 / 2e-26 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 111 / 1e-25 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 111 / 1e-25 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 105 / 1e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 106 / 8e-24 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G212800 [exp] 99 / 2e-22 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.019G087200 [exp] 97 / 2e-21 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024972 [exp] 713 / 0 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10010384 [exp] 452 / 4e-155 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10029493 [exp] 114 / 5e-27 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10024447 [exp] 115 / 9e-27 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 115 / 1e-26 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 112 / 1e-25 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 110 / 4e-25 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 108 / 7e-25 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 103 / 4e-24 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 102 / 9e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.005G144400.5 pacid=42802802 polypeptide=Potri.005G144400.5.p locus=Potri.005G144400 ID=Potri.005G144400.5.v4.1 annot-version=v4.1 ATGACTTCCATCACCTCAGTGGAATTGAATTACCTTGTTTTCCGCTACCTTCAAGAGTCAGGTTTTACACATTCAGCTTTTGCCTTAGGATATGAAGGTG GAATTAACAAGTGCACCATAGATGGCAATATGATTCCACCTGGTGCTCTCATTACATTTGTACAAAAGGGACTTCAGTACTTGGAAATGGAGGCGAATTT GAGTAATAGTGATGCAGATGTTGATGAAGATTTCTCTTTTTTGCAACCTTTGGATCTTATCACAAAAGATGTGAATGAATTGCAGCAGATCATAAAAGAG AAGAAAAAAAATCTGCACAAGGATAGAGAGAAAGAAAAAGAAAAGGAAAAAGACAAGGACAGAGACAAAGACAAAGATAAAGATAAAGAGTTCGAAAGGG AACATGAAAGAGAATGTGCCCGAGTGAGAGAGAAGGAAAGGCATGAAAGGGAAAAGGAGAAAGAAAAGGATAGAGAGAGGTTAGAAAGTGAAAAAGAGAG AGACAAGCAGCTTGAGGATAACACTGATAGAAGAATGGTCACTGATGCAGAAGATAAGCATGAAGAAAATGAATTTTTTGAAGTAGGACCAGAGCCAATG GATATTTCTATAACATCAACATCTCAGACATGTGAAATTCCTAGTTCTGATGTGATGATTTTGGAAGGACATACTTCTGAGGTTTGTGCCTGTGCATGGA GTCCAATAGGACAACTTCTTGCATCGGGTTCTGGAGATTCCACAGCAAGAATTTGGACAATAACAGAGGGGACCTCTAGGTCTGGCGTGCAGAATGATCC TCTAAATGTGCTGGTATTGAAGCATGTAAAGGGAAGGACAAATGAGAAAAGCAAAGATGTTACCACACTTGATTGGAATGGCGAGGGAACATTACTTGCT ACTGGCTCTTATGATGGGCAGGCAAGAATTTGGAGCACAGATGGTGAACTAAAGACAACATTGAGCAAGCATAAAGGACCCATATTTACTCTGAAGTGGA ACAAGAAGGGGGATTATCTTCTAACTGGAAGCTGTGATAAAACAGCAATTGTGTGGGATGTGAGGGCTGAGGAATGGAAACAGCAGTTTGAGTTTCATTC AGGTCCTACACTTGATGTTGACTGGCGCAATAATGTTTCATTTGCAACAAGCTCCACTGACAATATGATATATGTATGCAAAGTTGGAGAAACACGCCCT ATTAAATCTTTTGCTGGACATCAGGGTGAGGTTAATTGTGTCAAGTGGGATCCTACAGGTTCATTGTTGGCGTCTTGCTCTGATGATATCAGTGCTAAGA TATGGAGCATGAAGCAGGACAAGTATGTTCATGATTTGAGGGAACATTCTAAGGAGATTTATACTATCAGATGGAGCCCCACTGGACCTGGAACAAACAA TCCCAACCAGCAATTGGTGCTGGCGAGTGCATCATTTGACTCAACAGTGAAGTTATGGGATGTGGAATTTGGGAAACTTCTCAGCAGTTTGAATGGACAC AGAGAGCCTGTGTATTCAGTTGCATTTAGTCCTAATGGAGAGTATTTGGCAAGTGGATCTCTTGACAGATGCATCAACATCTGGTCATTGAAGGAAGGAA AGATTGTGAAAACATATACTGGCAATGGTGGAATATTTGAAGTTTGTTGGAACAAGGAAGGTGATAAAATTGCAGCCTGTTTTGCCAACAATACAGTTTG TGTTTTAGACTTCAGAATGTAA
AA sequence Show only first row Show all	>Potri.005G144400.5 pacid=42802802 polypeptide=Potri.005G144400.5.p locus=Potri.005G144400 ID=Potri.005G144400.5.v4.1 annot-version=v4.1 MTSITSVELNYLVFRYLQESGFTHSAFALGYEGGINKCTIDGNMIPPGALITFVQKGLQYLEMEANLSNSDADVDEDFSFLQPLDLITKDVNELQQIIKE KKKNLHKDREKEKEKEKDKDRDKDKDKDKEFEREHERECARVREKERHEREKEKEKDRERLESEKERDKQLEDNTDRRMVTDAEDKHEENEFFEVGPEPM DISITSTSQTCEIPSSDVMILEGHTSEVCACAWSPIGQLLASGSGDSTARIWTITEGTSRSGVQNDPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA TGSYDGQARIWSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKVGETRP IKSFAGHQGEVNCVKWDPTGSLLASCSDDISAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQQLVLASASFDSTVKLWDVEFGKLLSSLNGH REPVYSVAFSPNGEYLASGSLDRCINIWSLKEGKIVKTYTGNGGIFEVCWNKEGDKIAACFANNTVCVLDFRM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67320		HOS15	high expression of osmotically...		Potri.005G144400 [exp]	0	1
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.001G104300 [exp]	5.91	0.7842
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Potri.010G166100 [exp]	11.22	0.8175
AT5G19485			transferases;nucleotidyltransf...		Potri.001G271800 [exp]	12.72	0.7264
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.003G200000 [exp]	17.49	0.7580
AT2G27980			Acyl-CoA N-acyltransferase wit...		Potri.004G217600 [exp]	20.68	0.7984
ATMG00750		ATMG00750.1, OR...	GAG/POL/ENV polyprotein (.1)		Potri.001G204350 [exp]	21.21	0.6716
AT5G67320		HOS15	high expression of osmotically...		Potri.007G050100 [exp]	22.04	0.7774
AT5G03780		TRFL10	TRF-like 10 (.1)		Potri.002G005600 [exp]	22.44	0.7693
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	24.49	0.7523
AT1G20920			P-loop containing nucleoside t...		Potri.002G003600 [exp]	24.55	0.7965

Compare expression of checked genes

Potri.005G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.