Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43100 729 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G50050 674 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 183 / 9e-51 Eukaryotic aspartyl protease family protein (.1) AT1G08210 160 / 1e-42 Eukaryotic aspartyl protease family protein (.1) AT2G36670 160 / 2e-42 Eukaryotic aspartyl protease family protein (.1.2) AT5G36260 146 / 1e-37 Eukaryotic aspartyl protease family protein (.1) AT1G05840 145 / 3e-37 Eukaryotic aspartyl protease family protein (.1) AT3G02740 137 / 2e-34 Eukaryotic aspartyl protease family protein (.1) AT2G03200 132 / 5e-33 Eukaryotic aspartyl protease family protein (.1) AT1G65240 132 / 8e-33 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G020200 [exp] 770 / 0 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 183 / 1e-50 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 178 / 7e-49 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 155 / 1e-40 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.006G118800 [exp] 154 / 4e-40 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 150 / 3e-39 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 137 / 2e-34 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G000600 [exp] 132 / 6e-33 AT5G10770 286 / 2e-91 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 132 / 8e-33 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018709 [exp] 756 / 0 AT5G43100 841 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024792 [exp] 755 / 0 AT5G43100 839 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019309 [exp] 749 / 0 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10011513 [exp] 724 / 0 AT5G43100 687 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 164 / 8e-44 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 162 / 7e-43 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027732 [exp] 153 / 7e-40 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10014391 [exp] 151 / 4e-39 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 154 / 1e-38 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027001 [exp] 142 / 4e-36 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G144600.1 pacid=42802984 polypeptide=Potri.005G144600.1.p locus=Potri.005G144600 ID=Potri.005G144600.1.v4.1 annot-version=v4.1 ATGGCGCGACTGATTCAACTCACTATCCTTTTCATTCAATTTTTTTATTATTATTACATCACCACCACCACACACGGCGTCTCTTCCAATGGAACCACCT TCCTCCTCGACAGTTCCCGCTCTGCCATGATATTACCACTCTTTCTATCTCCTCCAAATCCGTGTACAAAATTCTCCAGTACGCGTCGCCTTCTCCAGAG ATCCAATGCTAATGCTCTGCCCAACGCGCACATGAGACTCCACGATGATCTCCTTATCAACGGGTATTATACAACAAGGCTATGGATCGGGACGCCGCCA CAGAGATTTGCGCTGATTGTTGATACAGGCAGTAGTGTTACTTACGTTCCATGTTCTTCTTGTGAGCAGTGCGGCAGGCACCAGGATCCAAAGTTTCAAC CAGATTTGTCAAGCACTTACCAATCTGTAAAGTGTAATATAGATTGCAATTGCGACGATGAAAAGCAACAATGTGTTTATGAGAGACAATATGCTGAAAT GAGTACTAGCAGTGGCGTTCTTGGTGAGGACATCATATCCTTTGGCAATCTAAGTGCACTTGCTCCTCAACGTGCTGTTTTTGGTTGTGAAAATATGGAA ACTGGTGACCTTTACAGTCAACATGCTGATGGCATAATGGGAATGGGTCGTGGGGATCTTAGTATTGTGGATCATCTTGTTGATAAAGGTGTGATTAACG ATTCATTCTCATTATGTTATGGTGGAATGGGAATTGGTGGAGGTGCGATGGTTCTTGGTGGTATATCGCCCCCTTCAAACATGGTTTTTAGCCAGTCTGA CCCAGTGCGCAGTCCATATTACAACATTGATCTGAAGGAGATACATGTTGCGGGAAAGCCATTGCCTCTAAATCCTACAGTGTTTGATGGAAAACATGGA ACCATCCTGGATAGTGGTACAACATATGCTTACCTACCAGAAGCAGCTTTCGTGTCATTTAAGGATGCTATTATGAAGGAGCTTCATTCCTTAAAGCCCA TCCGTGGGCCTGATCCAAATTATAATGACATTTGCTTTTCTGGTGCTGGAAGTGATATTTCCCAACTGTCAAGCTCCTTTCCAGCGGTTGAGATGGTATT TGGAAATGGGCAGAAGTTGTTACTGTCACCAGAAAATTATTTATTCCGACATTCAAAAGTGCATGGTGCATATTGTTTGGGTATATTCCAAAATGGAAAG GACCCAACCACTCTTCTAGGAGGAATTGTTGTCCGGAATACTCTTGTCTTGTATGATCGTGAAAATTCAAAGATTGGTTTTTGGAAGACTAATTGTTCGG AGTTATGGGAAAGACTTAATGTAGATGGTGCACCGCCCCCAGCACCTTCATCTTCAAATGGAAATAACTCAAATACAGAAATGCCACCCTCCGTGGCTCC TAGCGACCAAAAACATTATGGTCTTCCAGATGAAAAGAAAATTGGACAGATAACTTTTGAAATGATGTTGAATGTCAACTACTCAGACCTGAAGCTTCAC ATTTCAGAACTTGCTGAATCCATTGCTCAGGAGTTAGGCATTAACAGTTCACAGGTCTATATTCTGAATTCTATGGAAAAAGGAAATGCTTCGTACATTG AATGGGCTGTAGTCCCTTCCGGATCTGCTGACTGCATTTCCAATGTCACTGCTCTTAGCATAATTGCCCGTGTTGCTGAATACCACTTGCACCTTCCTGA TACATTTGGAAGTTATCATTTGATTAACTGGGAAATCAAGGCTTCAGCAAAACGGACATGGTGGCAGCAACATTTTCTATTGGTGGTTTTAGCCAGTGCT GTTACGTTTATTTTTGGATTATTAGCTCTTGGAATATGGTTTATATGGAGACACAGACAACGAGCATTGAATCCATACAAACCAGTCGATGCAGTAGTTA CTGAGCAAGAACTGCAGCCGTTGTAG
AA sequence Show only first row Show all	>Potri.005G144600.1 pacid=42802984 polypeptide=Potri.005G144600.1.p locus=Potri.005G144600 ID=Potri.005G144600.1.v4.1 annot-version=v4.1 MARLIQLTILFIQFFYYYYITTTTHGVSSNGTTFLLDSSRSAMILPLFLSPPNPCTKFSSTRRLLQRSNANALPNAHMRLHDDLLINGYYTTRLWIGTPP QRFALIVDTGSSVTYVPCSSCEQCGRHQDPKFQPDLSSTYQSVKCNIDCNCDDEKQQCVYERQYAEMSTSSGVLGEDIISFGNLSALAPQRAVFGCENME TGDLYSQHADGIMGMGRGDLSIVDHLVDKGVINDSFSLCYGGMGIGGGAMVLGGISPPSNMVFSQSDPVRSPYYNIDLKEIHVAGKPLPLNPTVFDGKHG TILDSGTTYAYLPEAAFVSFKDAIMKELHSLKPIRGPDPNYNDICFSGAGSDISQLSSSFPAVEMVFGNGQKLLLSPENYLFRHSKVHGAYCLGIFQNGK DPTTLLGGIVVRNTLVLYDRENSKIGFWKTNCSELWERLNVDGAPPPAPSSSNGNNSNTEMPPSVAPSDQKHYGLPDEKKIGQITFEMMLNVNYSDLKLH ISELAESIAQELGINSSQVYILNSMEKGNASYIEWAVVPSGSADCISNVTALSIIARVAEYHLHLPDTFGSYHLINWEIKASAKRTWWQQHFLLVVLASA VTFIFGLLALGIWFIWRHRQRALNPYKPVDAVVTEQELQPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	0	1
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	1.41	0.9714	Pt-ADL5.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	2.44	0.9686
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	2.44	0.9701
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	4.58	0.9522
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	4.89	0.9575
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	5.47	0.9512
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	5.47	0.9483
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	5.47	0.9571
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	6.00	0.9309
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	6.00	0.9543

Compare expression of checked genes

Potri.005G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.