Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23140 974 / 0 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 400 / 4e-128 ARM repeat superfamily protein (.1) AT3G54790 336 / 1e-103 ARM repeat superfamily protein (.1.2) AT3G01400 273 / 5e-84 ARM repeat superfamily protein (.1) AT5G58680 251 / 8e-76 ARM repeat superfamily protein (.1) AT4G16490 254 / 1e-75 ARM repeat superfamily protein (.1) AT3G46510 258 / 3e-75 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT1G23030 247 / 2e-71 PUB11 ARM repeat superfamily protein (.1) AT3G54850 245 / 1e-70 ATPUB14 plant U-box 14 (.1) AT1G71020 231 / 3e-67 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G051000 [exp] 1419 / 0 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G225400 [exp] 387 / 5e-122 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 382 / 2e-120 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G118800 [exp] 277 / 9e-86 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.001G238500 [exp] 278 / 1e-82 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.014G016400 [exp] 267 / 7e-82 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 270 / 1e-79 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.010G226500 [exp] 259 / 6e-76 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.008G035700 [exp] 259 / 6e-76 AT3G54850 821 / 0.0 plant U-box 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011514 [exp] 1072 / 0 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 1053 / 0 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10024899 [exp] 381 / 6e-120 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 375 / 1e-117 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011516 [exp] 372 / 1e-117 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 282 / 8e-88 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10032023 [exp] 259 / 3e-79 AT2G23140 309 / 1e-98 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 262 / 8e-79 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 257 / 1e-74 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 253 / 3e-73 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G144700.3 pacid=42804367 polypeptide=Potri.005G144700.3.p locus=Potri.005G144700 ID=Potri.005G144700.3.v4.1 annot-version=v4.1 ATGGAGATATCATTGTTAGAAGTGCTTCTGAAAAACATCTCTGCATTTTTACATATATCAAAAGATGACAAAATTAGCTCAGATCCAGTTCAGAAGTACT ACCAGAAGGCAGAAGAGATACTAAAGCTGCTGAAGCCAATACTTGATACCATTGTTAATTCTGAAGTACCTTCTGATGCAGTGCTTAATAAGGATTTCCA AGAATTGGGTCAATCTGTTGATGAATTGAAGGAGATATTTGAGAACTGGCAACCATTGTCAAGCAAAGTTCATTTTGTTCTGCAAATTGAATCATTAACA TCGAAAATTTGTTCTCTGGGCCTGAATAGTTTTCAGCTGTTAAAGGCTTCCCATCAACAACTACCAGATGAATTAAGTTCATCATCTCTTGAGAACTGCA TACAGAAAATTAAACTTTCTGGGTATGTACAAACATCATCTATCATTAAAGAAGCTATAAGTGACCAGGAGGAGGGTGTTGGACCCAGCTCAGAGATCCT GGTGAAAATTTCTGACAGCCTGTGTTTGAGGTCCAATCAGGAGATTTTGATTGAAGCAGTGGCCCTAGAGAAGTTAAAGGAGAATGCTGAACAAGCTGAG AAAACTGCAGAAGCTGAGTTTATTGATCAAATAATCACCCTTGTGACCCGCATGCATGAACGCCTTGTTCTAATAAAGCAGTCCCAGACATATAGCCCAG TCCCAATACCTGCTGATTTTTGTTGTCCTCTCTCTCTTGAGTTGATGACAGATCCGGTAATTGTGGCATCAGGGCAAACTTATGAGCGGGCTTTCATTAA AAACTGGATTGAACTTGGGCTCACTGTGTGTCCCAAGACACAGCAGACTCTGGCTCACACTAATCTCATAACTAATTACACTGTGAAGGCATTAATTGCA AATTGGTGTGAGTCAAACAATGTGAAGCTTCCTGATCCCATAAAGTCCATGAGCTTCAATCAGCCATCACCACTTCTTGTGCATGCAGAGTCTATTACAT CCAGGGAGCATGTTCTTTCTCATCCAAGGGGCAGCCAGCCAATATCTTCTGAGTCAAATCAGGCTACTGGTTCACCTGGTCAGAACATGATCTCTTCCAG TGGAATCCAACGAGAGGGAAGTTCTCCACTACATTCACATTCTACTTCTGAGAGTTCCTTGTCAGTTATAGTTGGAAATGGCCAGGGTTTGGATATTGCA AGAATATCATCACTAACGAGTTCTGAAGAAAGGTCCAGTAACTCAGAAGAGAGGAATTTGGATTCAGTTCACCACTGTTCTGCATCACCATCTAGAAAGG AAGTTTCAACTGCTGTTAGAGCTGATGGTCTACTATCTCAGAACCATAATAGAAGTGCATCGGCCTCCAGTGCACTTGGTCATGCAGCTTTTCCTCAAGG AGCATCAGGAGATGCCAATGAATCTTCCGAGTTCTCAAACCATCTTACATCCTACAGCAGTGATATTTCTGGGGAGGTAAAGCCAGAGCCACAGGCATCT TCTGCCTTGCACACCCCACACAGAGAACCTGAGTTCCCATCCCGTTTGGTTGATACACGGTCTAGAAGCCAAACAATCTGGCGCCGGCCTTCTGATAGGC TTGTGCCAAGGATAGTTTCTTCTTCAGCTATTGAAACAAGAGCTGATCTTGCTGGCATTGAAACAGAAGTTCGGAACCTGGTCGAGGACTTGAAGAGCAC TTTGGTTGATACTCAAAGAGATGCAACAGCTAAACTTAGGCTACTTGCTAAACACAACATGGATAACCGTATTGTTATAGCAAATTTTGGGGCCATTAGC TTACTGGTCAACTTGCTTCGCTCAACAGACATAAAAATTCAGGAAAATGCTGTCACAGCACTTCTTAACTTATCAATTAATGATAACAACAAAACAGCGA TTGGCAATGCAGATGCTATTGAACCCCTGATTCATGTCCTTGAAACAGGAAGCCCTGAGGCTAAAGAGAACTCAGCTGCCACACTCTTTAGTCTCTCTGT GATCGAGGATAACAAGGTCAGGATTGGAAGGTCTGGGGCAATTGTACCGCTGGTTGATTTACTGGGCAATGGAACACCCAGGGGGAAGAAGGATGCAGCC ACAGCTTTGTTTAACTTGTCAATATTTCATGAAAACAAGGACCGGATTGTACAAGCTGGTGCTGTTAAACATCTTGTGGAATTGATGGACCCGGCAGCTG GGATGGTTGACAAGGCAGTTGCTGTTTTGGCAAATCTTGCCACGATTCCAGAGGGAAGGAATGCTATTGGTCAGGAGGGTGGGATCCCTGTCCTGGTTGA GGTTGTCGAGTTGGGTTCTGCAAGAGGGAAGGAAAATGCAGCCGCTGCTCTCTTGCAGCTTTGCACAAATAGTAGTAGGTTTTGCCACATGGTGCTCCAA GAAGGTGCTGTCCCACCATTAGTGGCTTTGTCTCAGTCTGGTACTCCAAGGGCTAAAGAAAAGGCACAGGCCCTTCTTAGCTTTTTCAGAAACCAACGGC ATGGTAATGCTGGAAGGGCTTGA
AA sequence Show only first row Show all	>Potri.005G144700.3 pacid=42804367 polypeptide=Potri.005G144700.3.p locus=Potri.005G144700 ID=Potri.005G144700.3.v4.1 annot-version=v4.1 MEISLLEVLLKNISAFLHISKDDKISSDPVQKYYQKAEEILKLLKPILDTIVNSEVPSDAVLNKDFQELGQSVDELKEIFENWQPLSSKVHFVLQIESLT SKICSLGLNSFQLLKASHQQLPDELSSSSLENCIQKIKLSGYVQTSSIIKEAISDQEEGVGPSSEILVKISDSLCLRSNQEILIEAVALEKLKENAEQAE KTAEAEFIDQIITLVTRMHERLVLIKQSQTYSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIELGLTVCPKTQQTLAHTNLITNYTVKALIA NWCESNNVKLPDPIKSMSFNQPSPLLVHAESITSREHVLSHPRGSQPISSESNQATGSPGQNMISSSGIQREGSSPLHSHSTSESSLSVIVGNGQGLDIA RISSLTSSEERSSNSEERNLDSVHHCSASPSRKEVSTAVRADGLLSQNHNRSASASSALGHAAFPQGASGDANESSEFSNHLTSYSSDISGEVKPEPQAS SALHTPHREPEFPSRLVDTRSRSQTIWRRPSDRLVPRIVSSSAIETRADLAGIETEVRNLVEDLKSTLVDTQRDATAKLRLLAKHNMDNRIVIANFGAIS LLVNLLRSTDIKIQENAVTALLNLSINDNNKTAIGNADAIEPLIHVLETGSPEAKENSAATLFSLSVIEDNKVRIGRSGAIVPLVDLLGNGTPRGKKDAA TALFNLSIFHENKDRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTNSSRFCHMVLQ EGAVPPLVALSQSGTPRAKEKAQALLSFFRNQRHGNAGRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	0	1
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	1.41	0.8321
AT1G06340			Plant Tudor-like protein (.1)		Potri.009G151200 [exp]	2.00	0.7728
					Potri.009G163001 [exp]	5.19	0.7819
AT5G41370		XPB1, ATXPB1	ARABIDOPSIS HOMOLOG OF XERODER...		Potri.001G101300 [exp]	7.14	0.6776	Pt-XPB1.2
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.006G103400 [exp]	7.74	0.7693
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	11.83	0.7007
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	13.49	0.6851
AT5G63520			unknown protein		Potri.015G098800 [exp]	15.49	0.7423
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.006G115800 [exp]	19.36	0.6606
AT3G28720			unknown protein		Potri.004G123900 [exp]	22.22	0.6726

Compare expression of checked genes

Potri.005G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.