Plant FIBer expression Database

Potri.005G144800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59670 181 / 4e-51 unknown protein
AT4G37440 157 / 9e-43 unknown protein
AT3G50040 102 / 2e-23 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G051100
[exp]
562 / 0 AT3G59670 178 / 4e-50 unknown protein
Potri.013G127100
[exp]
226 / 4e-68 AT3G59670 377 / 2e-125 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014864
[exp]
246 / 4e-76 AT4G37440 155 / 2e-42 unknown protein
Lus10001409
[exp]
244 / 2e-75 AT4G37440 155 / 2e-42 unknown protein
Lus10027104
[exp]
171 / 5e-48 AT3G59670 244 / 1e-75 unknown protein
Lus10008349
[exp]
169 / 2e-46 AT3G59670 277 / 1e-86 unknown protein
Lus10011519
[exp]
157 / 4e-43 AT4G37440 134 / 8e-35 unknown protein
Lus10019305
[exp]
93 / 3e-21 AT4G37440 83 / 4e-18 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15397 DUF4618 Domain of unknown function (DUF4618)
Representative CDS sequence
>Potri.005G144800.6 pacid=42804155 polypeptide=Potri.005G144800.6.p locus=Potri.005G144800 ID=Potri.005G144800.6.v4.1 annot-version=v4.1
ATGGAAGTTTTGGCTAATAAAGAGAATAAGAGTATGCCTCGAGATCCACAAGATAATAAGTTCATACAATGTATGAGTAATTTCCAGGACAAAAGCTATC
ATGCAGAAGAAGCTTTACATGGTGATGGAGCTAAGGCAGCTGCAGCCAGATGTGAGGATGTGGAGGTTAATATAATTGACTGTACTACTGTCAGTGACAA
TGAGCAAAATGAAGCTAGATGTGATGATGCTGTGACCGAGAGCATTAGTTCTTTTGGGGACACGGAATCTAAGACTAAGAATGGTTCTTCTGGGTTAAGT
GATACTGAAGTTGAGTCACAGTTATTTGTTGGAGGTGGACAGATGTCTATATTTGATGGATATGGTGGCTCATTTAAAATGAGGAGGAAAAAGTTGACAG
ACCATTGGAGGAGATTTATTCATCCTCTCATGTGGAGATTTAAGTGGGCAGAATTGAAAATTAAGGAATTGCAGTCCCAAGCCCTTAAGTATGACAGAGA
AATTGCAGAAGATGAACAGAGAAAACTTTTTGATCTTGAAACATTTATGGAAGGAGGTTTTCCTGTGAAGTCACTGCCTTTTTCTACTTGTATGACGAGA
AAGAAAGCAATGAAGAGAAAGAAAAGAAAGAGATTTGAAGAGACTGAGGATGTAGCATCATATATGTTACAACATAACCTTTTCTCCTATTATGAAAATA
AGAAGTCTGCTACTGATGGTGCTTCTATTGATGATGGTTGCAGTAACCCAGCCAAGACAATAAATGACAATGATGAGTTTGGGACTCAAGATGGATTGAC
GTGTATTCAGTCCAGAGATTGCATCAGTGAACATATCCTTAGACAGATTGAAGTGCTAAAATCACAAGTCCATAAGTTGAAGTCCCGGGCAGACAAAGTG
GCTAGTGAAAATCCTGTGAAATTTTCTTCTGTCAATAATTTGAGCTTACTTGCACCATCTAATGCATTGACCAGTTCTGAACAAAATCCTGCTTCAGTTC
CAAAAATAGGAGATAGATTGCTACATACACAAACTCAGCATATGTCTGGGTGCAACATGGGGGATCTTATGCCTGAAACTGCAATTTCGAGTCATGGAGA
GGCCACCTCTCGATCTGATATGATTGAGAACACTGGCCAACCTCAGGGTGGGGTTTCATGTGGAAATGCTGAGAAAGAAATTCTGATACGTAATGCTGCA
GTGAAAGAGTTAAAAGATTTTGACATTGGGCTAGCAGAGAAGCTTCTGGGAGTAATGGAAAAGCAAACAGTCCAAGCTTCAGATCCTGACCTGCCAGAAG
AGATGCTAGTGACTCGTGTCCTTTTTGGTGGAAAATCACTTCCCAAATCCAGGTCTAATGTTTCCAATTACAAGAAAAAGCGGGCGAGAAAAAAATAA
AA sequence
>Potri.005G144800.6 pacid=42804155 polypeptide=Potri.005G144800.6.p locus=Potri.005G144800 ID=Potri.005G144800.6.v4.1 annot-version=v4.1
MEVLANKENKSMPRDPQDNKFIQCMSNFQDKSYHAEEALHGDGAKAAAARCEDVEVNIIDCTTVSDNEQNEARCDDAVTESISSFGDTESKTKNGSSGLS
DTEVESQLFVGGGQMSIFDGYGGSFKMRRKKLTDHWRRFIHPLMWRFKWAELKIKELQSQALKYDREIAEDEQRKLFDLETFMEGGFPVKSLPFSTCMTR
KKAMKRKKRKRFEETEDVASYMLQHNLFSYYENKKSATDGASIDDGCSNPAKTINDNDEFGTQDGLTCIQSRDCISEHILRQIEVLKSQVHKLKSRADKV
ASENPVKFSSVNNLSLLAPSNALTSSEQNPASVPKIGDRLLHTQTQHMSGCNMGDLMPETAISSHGEATSRSDMIENTGQPQGGVSCGNAEKEILIRNAA
VKELKDFDIGLAEKLLGVMEKQTVQASDPDLPEEMLVTRVLFGGKSLPKSRSNVSNYKKKRARKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59670 unknown protein Potri.005G144800
[exp]
0 1
AT4G01280 MYB Homeodomain-like superfamily p... Potri.014G089300
[exp]
1.00 0.9031
AT5G22350 ELM1 ELONGATED MITOCHONDRIA 1, Prot... Potri.004G197000
[exp]
4.47 0.8297
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.009G129600
[exp]
5.29 0.8377
AT5G54730 ATATG18F ARABIDOPSIS THALIANA HOMOLOG O... Potri.011G132700
[exp]
6.00 0.8126
AT4G02210 unknown protein Potri.002G200600
[exp]
6.32 0.8101
AT5G22040 unknown protein Potri.008G015500
[exp]
6.48 0.8304
AT4G15030 unknown protein Potri.001G266200
[exp]
7.48 0.8299
AT5G17510 unknown protein Potri.013G076800
[exp]
8.48 0.8308
AT3G61800 unknown protein Potri.014G099300
[exp]
8.94 0.8325
AT4G38180 FAR1_related FRS5 FAR1-related sequence 5 (.1) Potri.009G170100
[exp]
9.32 0.8388

Potri.005G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.