Plant FIBer expression Database

Potri.005G144900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G144900.1 pacid=42805579 polypeptide=Potri.005G144900.1.p locus=Potri.005G144900 ID=Potri.005G144900.1.v4.1 annot-version=v4.1
ATGGATCGGAATGGCATGCTTGGATTGGCACTGCTGTGCATTATTATCGCCGGTGTCGGTGGTCAAGCACCGGCTGCGACACCGACATCAACTCCCGCGA
CTCCAACAACTCCTGCCGTGCCAGTAGCAGCACCAACAAAACCTACAACACCAGCTCCCGTATCATCACCACCTGCGGCAACACCAGCAGCTTCTCCACC
GAAACAGACGGTTTCAGTTCCAGTTGCGGCTCCATTGGCCACACCACCTCCATCCGCGACTCCAGTTAGCTCCCCACCGACTCCAGTTCCTGTTAGTTCT
CCACCAGCAAAATCTCCTCCGTCTCCTGAGCCTGTTGCTTCCCCAACTAGTGCTCCACCGGCAAGCACTCCAGTTGCTCCACCGACCGCAGAGGTCCCTG
CTCCTTCTCATAGTAAAAAGAAGCCAAAGAAGCACCAAGCACCAGCTCCTGGTCCGGCATTGTTGAGCCCACCAGCACCACCAACGGAGGCCCCTGGACC
TAGTGCTGAATCTGTCTCTCCTGGTCCTTCTCTCTCTGACAACAGTGGAGCGGAAACAATAAGATGCTTGCAGAAGATGGCAGGAGGTTTGGCATTGGGA
TGGGGTCTGCTTGCTTTGATCTTCTAG
AA sequence
>Potri.005G144900.1 pacid=42805579 polypeptide=Potri.005G144900.1.p locus=Potri.005G144900 ID=Potri.005G144900.1.v4.1 annot-version=v4.1
MDRNGMLGLALLCIIIAGVGGQAPAATPTSTPATPTTPAVPVAAPTKPTTPAPVSSPPAATPAASPPKQTVSVPVAAPLATPPPSATPVSSPPTPVPVSS
PPAKSPPSPEPVASPTSAPPASTPVAPPTAEVPAPSHSKKKPKKHQAPAPGPALLSPPAPPTEAPGPSAESVSPGPSLSDNSGAETIRCLQKMAGGLALG
WGLLALIF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37450 ATAGP18, AGP18 arabinogalactan protein 18 (.... Potri.005G144900
[exp]
0 1
AT3G28200 Peroxidase superfamily protein... Potri.001G351000
[exp]
3.16 0.9146
AT1G07420 SMO2-1, ATSMO1,... Arabidopsis thaliana sterol 4-... Potri.001G245300
[exp]
4.58 0.9150 SMO2.1
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.006G158814
[exp]
16.52 0.8388
Potri.004G101600
[exp]
17.74 0.8580
AT3G16850 Pectin lyase-like superfamily ... Potri.010G005500
[exp]
18.43 0.8573
AT3G54690 SETH3 Sugar isomerase (SIS) family p... Potri.005G225700
[exp]
18.57 0.8014
AT3G59480 pfkB-like carbohydrate kinase ... Potri.007G129700
[exp]
20.19 0.7689
AT2G35470 unknown protein Potri.003G095500
[exp]
20.78 0.8304
AT2G42910 Phosphoribosyltransferase fami... Potri.002G059700
[exp]
23.15 0.8212
AT1G21510 unknown protein Potri.002G076200
[exp]
23.83 0.8714

Potri.005G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.