Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37470 468 / 6e-169 alpha/beta-Hydrolases superfamily protein (.1) AT3G03990 306 / 2e-105 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 233 / 2e-76 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 54 / 4e-08 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36610 45 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G15490 44 / 6e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 44 / 8e-05 alpha/beta-Hydrolases superfamily protein (.1) AT1G80280 44 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052000 [exp] 527 / 0 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 313 / 7e-108 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 307 / 1e-105 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G062700 [exp] 245 / 3e-81 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 232 / 7e-76 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 51 / 4e-07 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 49 / 1e-06 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.007G024400 [exp] 49 / 1e-06 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 49 / 2e-06 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014859 [exp] 464 / 2e-167 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 438 / 5e-157 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 436 / 2e-156 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 354 / 4e-124 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 307 / 1e-105 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10013541 [exp] 229 / 1e-74 AT3G03990 234 / 7e-77 alpha/beta-Hydrolases superfamily protein (.1) Lus10017296 [exp] 226 / 3e-73 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 220 / 4e-71 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10000054 [exp] 205 / 3e-67 AT4G37470 192 / 7e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 205 / 3e-65 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00561 [poplar] [flax] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.005G145000.1 pacid=42802615 polypeptide=Potri.005G145000.1.p locus=Potri.005G145000 ID=Potri.005G145000.1.v4.1 annot-version=v4.1 ATGGGTGTTGTAGAAGAAGCTCATAACGCGAAGATCTTGGGTTCAGGACAGCAAGTGATAGTTTTGGCTCATGGGTTTGGGACAGATCAGTCTGTCTGGA AGCACTTAGTTCCCCACCTTGTTGATGAGTACACTGTTATTTTGTATGATAACATGGGAGCTGGTACTACAAATCCAGATTACTTTGATTTCAGTAGGTA CTCTACCCTCGAAGGTTTTGCTTATGATTTACTTGCCATTTTAGAGGAGCTGCATGTTGAGTCTTGTATTTTTGTTGGTCACTCCGTTTCTGGCATGGTT GGTGTTATTGCCTCCATTAGTCGCCCTGATCTCTTCTCTAAAATTGTCATGCTTTCTGCTTCTCCAAGGTACTTGAATGATGTTGATTATTATGGAGGAT TCGAGCAGGAAGATTTAGACCAATTATTTGAAGCAATGCAAAACAATTACAAAGCATGGTGTTCTGGTTTTGCCCCACTAGCCGTGGGTGGAGACATGGA TTCAATAGCCGTGCAAGAATTCAGCCGCACACTCTTCAATATGAGACCAGACATAGCCCTTAGCGTGGCACAGACCATCTTCCACAGTGACATGAGGGCA ATCCTACATATGGTCACAGTCCCCTGTCACATCCTGCAGAGCATGAAGGACTTGGCTGTGCCTGTGGTTGCCTCTGAACATTTGCACCAAAATCTTGGTG GTGAGTCCATTGTTGAAGTCATGTCATCTGATGGTCACCTGCCTCAGTTGAGCTCTCCCGACATTGTGATCCCTGTGCTTCTTAAGCACATTCGTTTCAA TATAGCTGCGTAA
AA sequence Show only first row Show all	>Potri.005G145000.1 pacid=42802615 polypeptide=Potri.005G145000.1.p locus=Potri.005G145000 ID=Potri.005G145000.1.v4.1 annot-version=v4.1 MGVVEEAHNAKILGSGQQVIVLAHGFGTDQSVWKHLVPHLVDEYTVILYDNMGAGTTNPDYFDFSRYSTLEGFAYDLLAILEELHVESCIFVGHSVSGMV GVIASISRPDLFSKIVMLSASPRYLNDVDYYGGFEQEDLDQLFEAMQNNYKAWCSGFAPLAVGGDMDSIAVQEFSRTLFNMRPDIALSVAQTIFHSDMRA ILHMVTVPCHILQSMKDLAVPVVASEHLHQNLGGESIVEVMSSDGHLPQLSSPDIVIPVLLKHIRFNIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.005G145000 [exp]	0	1
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096132 [exp]	2.23	0.9670
AT3G29670		PMAT2	phenolic glucoside malonyltran...		Potri.004G096300 [exp]	3.16	0.9636
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Potri.011G098800 [exp]	4.58	0.9616
AT2G28690			Protein of unknown function (D...		Potri.008G010100 [exp]	7.74	0.9568
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	8.48	0.9570	VP2.2
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Potri.006G027300 [exp]	9.89	0.9586	Pt-AT103.2
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	10.95	0.9586
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140800 [exp]	11.31	0.9485	GSTA.1
AT4G27700			Rhodanese/Cell cycle control p...		Potri.012G020700 [exp]	11.66	0.9590
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.009G000100 [exp]	14.42	0.9507

Compare expression of checked genes

Potri.005G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.