Plant FIBer expression Database

Potri.005G145400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G37560 798 / 0 Acetamidase/Formamidase family protein (.1)
AT4G37550 775 / 0 Acetamidase/Formamidase family protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G053750
[exp]
0 / 1 AT4G37560 0 / 1 Acetamidase/Formamidase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011528
[exp]
808 / 0 AT4G37560 797 / 0.0 Acetamidase/Formamidase family protein (.1)
Lus10011529
[exp]
95 / 9e-23 AT4G37560 93 / 2e-22 Acetamidase/Formamidase family protein (.1)
Lus10019293
[exp]
92 / 2e-22 AT4G37560 92 / 3e-23 Acetamidase/Formamidase family protein (.1)
Lus10019294
[exp]
83 / 2e-19 AT4G37560 77 / 3e-18 Acetamidase/Formamidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03069 FmdA_AmdA Acetamidase/Formamidase family
Representative CDS sequence
>Potri.005G145400.10 pacid=42803881 polypeptide=Potri.005G145400.10.p locus=Potri.005G145400 ID=Potri.005G145400.10.v4.1 annot-version=v4.1
ATGGCTCCTTCAACCCCAAGACTAGTAGTGCCAATAGACTTGAAGAAGAAGCCTTGGGAGCAAATACTCCCTCTCCACAACCGGTGGCATCCAGGAATAC
CACCGGTTGCTGAGGTTAAAGTCGGTGAGGTGTTTAGAGTGGAGATGGTTGACTGGACTGGAGGTATGATCAAAGATAATGATTCTGCAATTGATGTGAA
AACCATAGACTTATCATCTGTTCACTATCTCAGTGGCCCAATTAGAGTTTTGGACGAGGAAGGGAAGCCAGCACAGCCAGGTGATCTACTTGCTGTTGAA
ATATGCAACTTGGGTCCTCTCCCTGGAGATGAATGGGGTTTTACAGCATCATTTGACAGAGAAAATGGAGGTGGTTTCTTGACTGACCACTTTCCTTGTG
CAACCAAAGCTATTTGGTATTTTGAAGGAATCTATGCCTATTCGCCTCAAATACCAGGGGTTCGATTTCCAGGTCTGACTCACCCTGGAATAGTTGGTAC
TGCACCATCAAGGGAACTCCTGAACATATGGAATGAAAGGGAGAGAGAAGTAGAGGAAAATGGGCTCAAACATCTGAAGCTATGCGAAGTTTTGCATTCA
AGACCACTGGCAAATCTACCATCAACAAAAGGTTGCCACCTAGGAAAGATCCAAAAGGGTACGCCTGAATGGGAAAAGATTGCTACTGAGGCAGCAAGAA
CAATTCCAGGAAGAGAAAATGGAGGAAATTGTGACATAAAAAATCTTAGTAGAGGTTCGAAAGTGTATCTTCCAGTATTCATAGAAGGAGCAAATGTTAG
CACTGGTGACATGCACTTCTCTCAGGGAGATGGTGAAATTGCCTTCTGTGGGGCGATTGAGATGAGTGGGTTCTTGGAGCTCAAGTGTGAAATCATAAAG
GGTGGAATGAAAGAGTACCTTACCCCAATGGGGCCGACTCTTCTTCATGTGAACCCAATCTTTGAGATAGGCCCTGTGGAGCCAAGATTTTCAGAATGGT
TGGTATTTGAAGGCATCAGTGTAGATGAGAGCGGAAGGCAGCACTTCCTTGATGCAAGTGTTGCATACAAGCGAGCAGTGCTCAATGCCATCGACTACCT
CTCTAAATTTGGCTACTCCAAAGAACAGATGTATCTTCTGCTATCATGTTGCCCATGTGAAGGAAGGATTTCTGGAATAGTCGATTCTCCTAATGCTGTT
GCCACCTTTGCAATCCCAACATCTATCTTTGACCAGGATATTCGTCCAAAAACGAAGGTGCCAGTTGGACCCCGACTGGTGAGGACACCAGATGTGCTAA
AGTGCACTTATGATGGAAACTTGCCCATAACTAAGAACCCCAGCGCCATGACTTGA
AA sequence
>Potri.005G145400.10 pacid=42803881 polypeptide=Potri.005G145400.10.p locus=Potri.005G145400 ID=Potri.005G145400.10.v4.1 annot-version=v4.1
MAPSTPRLVVPIDLKKKPWEQILPLHNRWHPGIPPVAEVKVGEVFRVEMVDWTGGMIKDNDSAIDVKTIDLSSVHYLSGPIRVLDEEGKPAQPGDLLAVE
ICNLGPLPGDEWGFTASFDRENGGGFLTDHFPCATKAIWYFEGIYAYSPQIPGVRFPGLTHPGIVGTAPSRELLNIWNEREREVEENGLKHLKLCEVLHS
RPLANLPSTKGCHLGKIQKGTPEWEKIATEAARTIPGRENGGNCDIKNLSRGSKVYLPVFIEGANVSTGDMHFSQGDGEIAFCGAIEMSGFLELKCEIIK
GGMKEYLTPMGPTLLHVNPIFEIGPVEPRFSEWLVFEGISVDESGRQHFLDASVAYKRAVLNAIDYLSKFGYSKEQMYLLLSCCPCEGRISGIVDSPNAV
ATFAIPTSIFDQDIRPKTKVPVGPRLVRTPDVLKCTYDGNLPITKNPSAMT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G37560 Acetamidase/Formamidase family... Potri.005G145400
[exp]
0 1
AT2G44710 RNA-binding (RRM/RBD/RNP motif... Potri.005G116400
[exp]
2.23 0.8833
AT5G65685 UDP-Glycosyltransferase superf... Potri.007G009600
[exp]
3.74 0.8741
AT5G13520 peptidase M1 family protein (.... Potri.010G215700
[exp]
7.93 0.8616
AT4G32551 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimeri... Potri.006G248100
[exp]
8.06 0.8572 LUG.1
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.005G117900
[exp]
9.38 0.8444
AT5G46410 SSP4 SCP1-like small phosphatase 4 ... Potri.011G078300
[exp]
10.58 0.8579
AT1G73210 Protein of unknown function (D... Potri.004G068700
[exp]
12.96 0.8484
AT5G13970 unknown protein Potri.002G238100
[exp]
16.06 0.8533
AT5G13950 unknown protein Potri.014G144100
[exp]
18.02 0.8401
AT5G51280 DEAD-box protein abstrakt, put... Potri.004G224000
[exp]
19.97 0.8505

Potri.005G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.