Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67390 89 / 7e-22 unknown protein AT5G07790 49 / 7e-07 unknown protein AT5G57340 47 / 3e-06 unknown protein AT1G13940 47 / 6e-06 Plant protein of unknown function (DUF863) (.1) AT1G26620 45 / 1e-05 Plant protein of unknown function (DUF863) (.1) AT1G69360 44 / 7e-05 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053300 [exp] 293 / 2e-101 AT5G67390 100 / 3e-26 unknown protein Potri.004G125900 [exp] 50 / 6e-07 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 44 / 3e-05 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 44 / 3e-05 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 42 / 0.0001 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.006G262600 [exp] 42 / 0.0002 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) Potri.018G020800 [exp] 41 / 0.0003 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 40 / 0.0005 AT5G57340 72 / 8e-15 unknown protein Potri.003G112000 [exp] 40 / 0.0009 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011080 [exp] 129 / 4e-37 AT5G67390 91 / 7e-23 unknown protein Lus10019291 [exp] 86 / 9e-21 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 84 / 5e-20 AT5G67390 97 / 3e-25 unknown protein Lus10036807 [exp] 47 / 8e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 46 / 1e-05 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10014857 [exp] 40 / 0.0003 ND 39 / 3e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G145800.1 pacid=42805664 polypeptide=Potri.005G145800.1.p locus=Potri.005G145800 ID=Potri.005G145800.1.v4.1 annot-version=v4.1 ATGGGGAAATTTCTCAAGCCCTGCGACAAGGAAGACATGAGAATGGCCATGTTAAAACACGAAGAGACATTCAAAGAGCAGATATGTGAACTTCATCGTC TATATCGAATCCAAAAGATAATGATGAGAAACATTGAAAGCAGCAGGCCAGATGAGCGGAGTCGAGAGTTATGGAGCTACAAGAATGGCTTTAGTTTTAA TCAGCCTAATCATGCTCGCGATATGCAGCAGAAGTCGATAGGGAGACTTGACTTGGAGTGGCCTTCCGAAGATTGTGTTGCAGAATCAAATGCAGATAGA GTATTAGAGCTAATAGAAGAGAGTGAGATTCAGCTAACATTGGGACCTTCGAGTTATGACAGAAGGAAGAAACCTGAAACACCACTAACTTCAGATTCAG GAACAAGCCTCTCTTCGTCTTCCACTGGATCCAGCCATATAAACAGGACAAGTTCCTTGAAACATCAAAAGACAAGCACCAAAAGAGAAGAATGCTGCGA ATTGGGGATTTTCCAAGTTCCTGACATGACCTTGGGGTACCAAAATGAAAGTAAAAAGGGTATGGGGGTTGAAGAACAACTGAGACAGGAGAGACAAAAA CAACCCCCTTGGCTTTGCCAGGTTTTGAGTCTGAACATGGCTTGA
AA sequence Show only first row Show all	>Potri.005G145800.1 pacid=42805664 polypeptide=Potri.005G145800.1.p locus=Potri.005G145800 ID=Potri.005G145800.1.v4.1 annot-version=v4.1 MGKFLKPCDKEDMRMAMLKHEETFKEQICELHRLYRIQKIMMRNIESSRPDERSRELWSYKNGFSFNQPNHARDMQQKSIGRLDLEWPSEDCVAESNADR VLELIEESEIQLTLGPSSYDRRKKPETPLTSDSGTSLSSSSTGSSHINRTSSLKHQKTSTKREECCELGIFQVPDMTLGYQNESKKGMGVEEQLRQERQK QPPWLCQVLSLNMA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67390			unknown protein		Potri.005G145800 [exp]	0	1
AT3G48520		CYP94B3	cytochrome P450, family 94, su...		Potri.002G042100 [exp]	2.00	0.8964	Pt-CYP94.3
AT1G77020			DNAJ heat shock N-terminal dom...		Potri.002G074600 [exp]	2.82	0.8865
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	2.82	0.9058
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	4.47	0.8709
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	4.58	0.8956
AT1G03220			Eukaryotic aspartyl protease f...		Potri.008G203200 [exp]	5.47	0.8781
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.002G044900 [exp]	10.90	0.8728	Pt-AUX28.3
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	12.24	0.8642
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	14.42	0.8614	Pt-KCS1.1
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.006G254600 [exp]	15.09	0.8079

Compare expression of checked genes

Potri.005G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.