Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CKA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67380 620 / 0 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 618 / 0 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G23080 598 / 0 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT2G23070 570 / 0 Protein kinase superfamily protein (.1) AT1G76540 138 / 3e-38 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G20930 138 / 3e-38 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT3G48750 136 / 9e-38 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT3G61160 137 / 7e-37 Protein kinase superfamily protein (.1.2) AT2G30980 135 / 2e-36 ASKdZeta, ATSK23, BIL1, ATSK2-2 BIN2-LIKE 1, SHAGGY-LIKE PROTEIN KINASE 23, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 2, SHAGGY-related protein kinase dZeta (.1) AT1G06390 134 / 5e-36 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052800 [exp] 646 / 0 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.007G054100 [exp] 576 / 0 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G146000 [exp] 566 / 0 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.002G003400 [exp] 143 / 3e-40 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 137 / 1e-37 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G155000 [exp] 139 / 2e-37 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Potri.004G133500 [exp] 132 / 3e-36 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G113200 [exp] 131 / 1e-35 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.016G142800 [exp] 130 / 2e-35 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011534 [exp] 626 / 0 AT3G50000 620 / 0.0 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) Lus10019288 [exp] 625 / 0 AT5G67380 623 / 0.0 casein kinase alpha 1 (.1.2) Lus10011526 [exp] 569 / 0 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10019296 [exp] 567 / 0 AT2G23070 631 / 0.0 Protein kinase superfamily protein (.1) Lus10032849 [exp] 556 / 0 AT5G67380 563 / 0.0 casein kinase alpha 1 (.1.2) Lus10040593 [exp] 140 / 4e-39 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 139 / 2e-38 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10013088 [exp] 137 / 5e-37 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 134 / 1e-35 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10014283 [exp] 132 / 3e-35 AT2G18170 611 / 0.0 MAP kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G145900.1 pacid=42805303 polypeptide=Potri.005G145900.1.p locus=Potri.005G145900 ID=Potri.005G145900.1.v4.1 annot-version=v4.1 ATGTCGAAAGCGCGAGTCTATACCGATGTGAATGTTCTGCGTCCTAAGGAGTATTGGGATTACGAGTCTCTCGCTGTTCAGTGGGGTGATCAAGATGATT ATGAGGTTGTTCGGAAAGTTGGAAGGGGAAAGTACAGTGAGGTTTTTGAGGGCATAAATGTCAATAGCAATGAGCGGTGCATTATCAAGATCCTCAAACC TGTTAAGAAAAAGAAGATTAAAAGGGAAATAAAAATACTTCAGAACCTTTGCGGTGGCCCGAATGTAGTAAAGCTTCTTGACATTGTCAGAGATCAGCAC TCAAAAACTCCTAGCCTCATATTTGAATATGTGAACAGTACAGACTTCAAAGTTTTGTACCCCACCTTGACTGATTATGACATACGCTACTACATATATG AGCTTCTCAAGGCATTAGATTACTGCCACTCACAGGGAATAATGCATAGAGATGTCAAGCCTCACAATGTTATGATAGACCATGAGTTGCGAAAACTTCG CTTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAGTATAATGTCCGGGTAGCTTCAAGATATTTTAAGGGGCCTGAACTTCTTGTTGAT TTACAAGACTATGACTATTCTTTAGACATGTGGAGCCTTGGTTGCATGTTTGCCGGAATGATATTTAGGAAGGAGCCATTCTTTTATGGCCATGACAACC ATGATCAGCTTGTCAAAGTTGCCAAGGTACTAGGGACTGATGAGCTAAATGCATATCTGAACAAATATCATTTAGAGCTCGATCCTCAACTTGATGCGCT CGTTGGGAGGCACAGTAGGAAGCCCTGGTCAAGATTTATTAATTCAGATAATCAGCACCTTGTGTCTCCAGAGGCCCTTGATTTTCTTGATAAGCTTCTT CGGTATGATCATCAAGATAGGCTAACTGCTAGAGAAGCAATGGCACACCCATATTTCTCTCAAGTGAGAGCTGCAGAAAGTAGCAGGATGCGGACACAGT AA
AA sequence Show only first row Show all	>Potri.005G145900.1 pacid=42805303 polypeptide=Potri.005G145900.1.p locus=Potri.005G145900 ID=Potri.005G145900.1.v4.1 annot-version=v4.1 MSKARVYTDVNVLRPKEYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQH SKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVD LQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKVAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSRFINSDNQHLVSPEALDFLDKLL RYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.005G145900 [exp]	0	1	Pt-CKA1.2
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108350 [exp]	2.00	0.6994
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108400 [exp]	4.00	0.6819
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.010G141300 [exp]	8.48	0.6386
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	18.00	0.6302
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	20.17	0.6146
AT3G20920			translocation protein-related ...		Potri.001G257500 [exp]	21.70	0.6713
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	31.68	0.6495
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.002G111400 [exp]	32.93	0.6381
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	37.14	0.6093
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.001G113900 [exp]	38.23	0.5837

Compare expression of checked genes

Potri.005G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.