Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14820 670 / 0 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 649 / 0 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 617 / 0 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 570 / 0 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT4G31820 479 / 2e-163 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT1G67900 470 / 6e-159 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G03250 389 / 5e-128 Phototropic-responsive NPH3 family protein (.1) AT3G26490 384 / 3e-126 Phototropic-responsive NPH3 family protein (.1) AT5G47800 375 / 4e-123 Phototropic-responsive NPH3 family protein (.1) AT1G30440 375 / 8e-122 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G089500 [exp] 808 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 801 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.018G018600 [exp] 590 / 0 AT4G31820 630 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.006G264300 [exp] 561 / 0 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.010G046800 [exp] 482 / 2e-163 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.008G186100 [exp] 478 / 6e-162 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.017G048200 [exp] 433 / 6e-144 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 427 / 1e-141 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.006G003000 [exp] 401 / 7e-133 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014632 [exp] 734 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 734 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 691 / 0 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 679 / 0 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10042414 [exp] 536 / 0 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 485 / 4e-160 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 460 / 1e-154 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 403 / 5e-133 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 390 / 2e-127 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 385 / 2e-125 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.005G146400.4 pacid=42805308 polypeptide=Potri.005G146400.4.p locus=Potri.005G146400 ID=Potri.005G146400.4.v4.1 annot-version=v4.1 ATGAAATTTATGAAGCTTGGATCCAAGCCTGATTCGTTTCAGGCCGATGGGGACAACATCAGGTATGTTGCAACTGAGTTGGCAACGGACATAGTGATTG ATATTGGGGGTGTGAAATTCTCTCTGCACAAGTTTCCACTGCTATCCAAGAGTGAACATCTGCAGAAGCTGGTTGCGAGCACAAGTGATGATGGTGATGA AATTCTCATCCAGGAGATTCCTGGTGGACCTGCTGCTTTTGAGATATGTGCAAAGTTCTGTTATGGTATGACTGTCACTCTCAATGCATACAATGTGGTT GCAGCTCGGTGTGCAGCAGAGTACCTTGAGATGTATGAAAGTGTTGAGAAAGGAAACCTTGTCTACAAGATTGATATCTTCCTAAATTCCAGCATCTTTC GCAGCTGGAAAGATTCTATTATCATCCTTCAAACCACAAAATCTCTTCTTCCATGGGCCGAAGAATTAAATTTGGTTAGCCATTGTCTTGATTCCATAGC TTCAAAGGCTTGCATGGATACTACCAAGGTGGAGTGGACATACACCTATAACAGGAAAAAGCTCCCATCTGAGAACGGGAAAGATCCTCTGTGGAATGGT GTAAGAAGACCCCAAGTAGTTCCTAAAGATTGGTGGGTAGAAGATCTTTGTGAACTTCAAATCGATTTGTACAAAAGGGTAATTACAACAATAAAAACAA AAGGAAGAGTCTCCAGTGATTTAATTGGAGAAGCCCTGATTGCATATGCCTTGAGAAGACTGCCAGGTTTTAGCAAGGGAATTGTGCAGAGTGGCGATAT TACAAAATACAGGTCATTAGCTGAGACCATTGTCCGGCTGCTGCCCACAGAGAAAGGCAGTGTTCCCTGTGGTTTCATGCTTAGGTTGTTAAGAGCAGCA ATATTGTTAGAATGTGAAGAAACGGAAAGGAATGAATTGATGAGAAGAATAAGTCAACAGCTCGATGAGGTTACAGTGGCTGATCTTTTGATTCAATCTT CAACAAGGGAAACAACAATGTATGATGTTGATATTGTGCAAGTCCTAGTAGAGAAGTTTGTGGCTCATGAACAGAATGCTAAGAATGCTCTTCTTGTAGA CAGTTACTTCCAGGAGAATAGAAGCCCAAGGTTTGCATCAGATGCTTCCAAAGTGCTCGTGGCAAAGCTGGTCGAGGGTTATCTTGCCGAAATTGCCCGA GATCCCAATTTATCTCTCTCAAAGTTTGTCAATCTTGCTAACACGGTATCAAGCTTTGGAAGATCATCACATGATGGATTGTACCGTGCCGTCGATATGT ATATTAAGGAACACCCTGGGATCAGCAAGAGTGAGAGAAAGAGAATTTGTAGGTTGATGGATTGCAGGAAGTTGTCAGCAGACGCGTGCATGCATGCTGT GCAAAATGAGCGGTTACCCTTGCGAGTTGTTGTACAGGTTCTCTTCTTTGAGCAGATTAGGCAAGCAACATTATCTGTAGACAACAGCACTCAAGAACTA CCTGGGTCTATTAGGGCCTTACTCCCGGGTGGGTCTCATGGGAGCTCAAGATCGACAACCAATACAGAAGAGGACTGGGATGCTGTGCCAACAGCTGAAG ATGTCAAGGCTTTGAAAGGAGAACTTGCTGCTCTAAGGCTAGGGGGCAGTGGCAGCGATAGAAATTTGAATGATGGCGCCAAAAATGATGCTGAAAAAGT TGCAGCTGGTAAACTGAAAGGTTTAGTCATGTCAAAGATCTTTTCGAAGCTGTGGTCAAACAAAGAGCGAAATGGTGAGATTAGCAGTTCCGATACATCG GGTTCTGCCACTGCAGAGGAGACAAAATCTACCCCTTCAAGAAGCAGAAGGCATTCAGTATCATTGTCAGAACACCCTTAA
AA sequence Show only first row Show all	>Potri.005G146400.4 pacid=42805308 polypeptide=Potri.005G146400.4.p locus=Potri.005G146400 ID=Potri.005G146400.4.v4.1 annot-version=v4.1 MKFMKLGSKPDSFQADGDNIRYVATELATDIVIDIGGVKFSLHKFPLLSKSEHLQKLVASTSDDGDEILIQEIPGGPAAFEICAKFCYGMTVTLNAYNVV AARCAAEYLEMYESVEKGNLVYKIDIFLNSSIFRSWKDSIIILQTTKSLLPWAEELNLVSHCLDSIASKACMDTTKVEWTYTYNRKKLPSENGKDPLWNG VRRPQVVPKDWWVEDLCELQIDLYKRVITTIKTKGRVSSDLIGEALIAYALRRLPGFSKGIVQSGDITKYRSLAETIVRLLPTEKGSVPCGFMLRLLRAA ILLECEETERNELMRRISQQLDEVTVADLLIQSSTRETTMYDVDIVQVLVEKFVAHEQNAKNALLVDSYFQENRSPRFASDASKVLVAKLVEGYLAEIAR DPNLSLSKFVNLANTVSSFGRSSHDGLYRAVDMYIKEHPGISKSERKRICRLMDCRKLSADACMHAVQNERLPLRVVVQVLFFEQIRQATLSVDNSTQEL PGSIRALLPGGSHGSSRSTTNTEEDWDAVPTAEDVKALKGELAALRLGGSGSDRNLNDGAKNDAEKVAAGKLKGLVMSKIFSKLWSNKERNGEISSSDTS GSATAEETKSTPSRSRRHSVSLSEHP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.005G146400 [exp]	0	1
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.015G079300 [exp]	2.44	0.8548
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	3.00	0.8548
AT2G21470		EMB2764, ATSAE2...	EMBRYO DEFECTIVE 2764, SUMO-ac...		Potri.004G158900 [exp]	6.92	0.7953	Pt-SAE2.1
AT3G13690			Protein kinase protein with ad...		Potri.006G150100 [exp]	7.21	0.8372
AT5G01500		TAAC	thylakoid ATP/ADP carrier (.1)		Potri.006G099800 [exp]	8.83	0.8035
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	11.35	0.8381
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	11.83	0.8156	Pt-PHYB.1
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121550 [exp]	12.24	0.7835
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Potri.011G081200 [exp]	12.64	0.8114
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	18.00	0.8037

Compare expression of checked genes

Potri.005G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.