Plant FIBer expression Database

Potri.005G146450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G146450.1 pacid=42803614 polypeptide=Potri.005G146450.1.p locus=Potri.005G146450 ID=Potri.005G146450.1.v4.1 annot-version=v4.1
ATGGAACTAAACACTCTCCCAAAATTCCAAAAACTAAGCAACAAAGAGCTAAACACCCATGACTCTCCAGCTCTCGAAGATAACAGAAGTTTAACTTCAC
TGACGGTAAGCATCACAGCAACCGCGTCCACTTCTTCATCTTCATTCACAATAGCCACGACAGTTCTGGTTTTAGCTGAGAGTAGTGGCACCACCTGTGT
CAGTCAGGAGCAACAGCAAGCCTTTCTTTTCAGCCAAGAACAGCCACAGCACCAGCATCGGTCAGGAACAACAACTAAAGTTTTCAGCCGTAAGCAGTAG
AA sequence
>Potri.005G146450.1 pacid=42803614 polypeptide=Potri.005G146450.1.p locus=Potri.005G146450 ID=Potri.005G146450.1.v4.1 annot-version=v4.1
MELNTLPKFQKLSNKELNTHDSPALEDNRSLTSLTVSITATASTSSSSFTIATTVLVLAESSGTTCVSQEQQQAFLFSQEQPQHQHRSGTTTKVFSRKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G146450
[exp]
0 1
AT2G36290 alpha/beta-Hydrolases superfam... Potri.008G021200
[exp]
2.64 0.8675
AT1G21980 ATPIPK1, ATPIP5... phosphatidylinositol-4-phospha... Potri.019G015768
[exp]
7.48 0.8299
AT4G30520 SARK SENESCENCE-ASSOCIATED RECEPTOR... Potri.018G101300
[exp]
7.54 0.8284
AT5G03620 Subtilisin-like serine endopep... Potri.006G114500
[exp]
9.00 0.8024
AT3G59030 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALI... Potri.005G207600
[exp]
15.49 0.8042
AT1G22640 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMA... Potri.015G041100
[exp]
20.49 0.8103 Pt-MYB.36
Potri.001G062100
[exp]
21.81 0.7958
AT3G59030 ATTT12, TT12 TRANSPARENT TESTA 12, A. THALI... Potri.002G055100
[exp]
23.23 0.7763
AT5G45470 Protein of unknown function (D... Potri.015G113400
[exp]
23.36 0.7961
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.013G132200
[exp]
25.45 0.7654

Potri.005G146450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.