Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10120 267 / 3e-86 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 201 / 2e-59 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 172 / 2e-49 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 161 / 1e-45 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 160 / 1e-45 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT3G07340 162 / 2e-45 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 155 / 5e-44 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G48560 158 / 2e-43 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G59640 152 / 2e-43 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT4G36540 149 / 9e-42 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114700 [exp] 681 / 0 AT1G10120 274 / 3e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 194 / 3e-56 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 193 / 5e-56 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 182 / 6e-52 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 182 / 8e-52 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 171 / 1e-47 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G156000 [exp] 165 / 2e-46 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.012G104900 [exp] 161 / 8e-46 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G117300 [exp] 158 / 7e-44 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006491 [exp] 343 / 5e-116 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012484 [exp] 337 / 5e-114 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 186 / 8e-54 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 183 / 1e-52 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030908 [exp] 180 / 2e-49 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 175 / 8e-48 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023562 [exp] 155 / 5e-44 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 155 / 1e-43 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 153 / 5e-43 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013284 [exp] 151 / 6e-43 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G146500.1 pacid=42804225 polypeptide=Potri.005G146500.1.p locus=Potri.005G146500 ID=Potri.005G146500.1.v4.1 annot-version=v4.1 ATGGATGGTAGCGGTGATAACAATGGTGATTTGGGATATCAAAATAGAGTTGAGAGTGTTATGAAATGTCCATCTTCAGGAATGAACACTAACCCCTTCT ATGTTTCTGCTTGGGATCCAGTTGTTTCACTTAGCCAGCTTGGGAATTTTGGTGGTTCATCAACAGGGTCTCAAAGTGAATTTTCCAATTCTCCTTTCCC AATTGTAATGGAAAACCCAGGAATTAGTAACACCTGCCACCTTGTTCATTACCCATCTGATTCAGGCTTTGTTGAGCTGGTGCCAAAGTTTCCTGGCTTT GGAAGTGGGAATTTCTCAGAAATGGTTGGCTCTGTTGGCCTAACTGAGTGTGGCCAGATTGTTAATGCTGGGTGCCCTCCAAATTACAAGGAGGCAAACA ATGAGAGCACTGCACATGGTGCACAACGTGAGGAAGATCAGCAATTATCCGAAGAGACAACTATAGGAGCCTTACCAAATGGAAAGAGAAGAAGACTAGT GGCCGAGTCCAATTCTCCTTTTGATCCAAACAAGAATGCTGAAGGAGAGTTTCAAAAGGATCCTTCTGGAGAGAGTTCTGATATTGCAAAAGAACTGGAT GAGAAGAAACAAAAAATTGAACAAAACTGTAGTGCTAATTTGCGTGGCAAACAGGTAGCTAAACAAGCTAAAGACAATCCTCAAAGTGGGGAAGCTCCTA AAGATGATTACATTCACGTAAGAGCCAGAAGGGGTCAAGCTACCAATAGCCACAGCCTTGCAGAGAGGGTGAGAAGAGAAAAGATTAGTGAGCGGATGAG AATGCTACAAGAACTTGTTCCAGGATGCAATAAGATTACTGGCAAGGCGGTGATGCTTGATGAGATCATCAACTATGTGCAATCACTGCAACAGCAGGTT GAGTTTTTGTCAATGAAACTAGCAACTGTAAATCCAGAACTGTACAATGATGTTGAGAAGATTCAATCTAAAGATATCCTTCATTCACGTGGTGGCAATG CAGCTATTCTAGGATTCAGTCCTGGGATAAATTCGCACCAGTATTCACATGGGATTTTTCAACCTGGCATACCAGTCATTCTAAATTCCAATCCACAATT TTCTCCAGCACATCATGCTGTATTAGATAACGAGCTCCAGAGCTTTTTCCAAATGGGATTTGATTCCAGTTCAGCTGTTGACAGTTTAGGACCAAATGCA GGGCATTTGAAACCAGAGCTCTGA
AA sequence Show only first row Show all	>Potri.005G146500.1 pacid=42804225 polypeptide=Potri.005G146500.1.p locus=Potri.005G146500 ID=Potri.005G146500.1.v4.1 annot-version=v4.1 MDGSGDNNGDLGYQNRVESVMKCPSSGMNTNPFYVSAWDPVVSLSQLGNFGGSSTGSQSEFSNSPFPIVMENPGISNTCHLVHYPSDSGFVELVPKFPGF GSGNFSEMVGSVGLTECGQIVNAGCPPNYKEANNESTAHGAQREEDQQLSEETTIGALPNGKRRRLVAESNSPFDPNKNAEGEFQKDPSGESSDIAKELD EKKQKIEQNCSANLRGKQVAKQAKDNPQSGEAPKDDYIHVRARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQV EFLSMKLATVNPELYNDVEKIQSKDILHSRGGNAAILGFSPGINSHQYSHGIFQPGIPVILNSNPQFSPAHHAVLDNELQSFFQMGFDSSSAVDSLGPNA GHLKPEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	0	1
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.016G054900 [exp]	1.41	0.8602	Pt-CESA4.2
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.013G019800 [exp]	5.19	0.7894
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	6.32	0.8173
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.010G070600 [exp]	6.48	0.8195
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	8.42	0.7665	CYP72D2-1
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.004G230300 [exp]	12.24	0.8156	Pt-STI.4
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.005G173300 [exp]	13.30	0.8281
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.004G179742 [exp]	22.13	0.7566
AT2G33205			Serinc-domain containing serin...		Potri.003G174200 [exp]	25.33	0.7541
AT1G20060			ATP binding microtubule motor ...		Potri.013G068501 [exp]	30.65	0.8266

Compare expression of checked genes

Potri.005G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.