Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07990 236 / 3e-78 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G18140 52 / 9e-08 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 51 / 2e-07 DNAJ heat shock family protein (.1) AT5G48030 51 / 3e-07 GFA2 gametophytic factor 2 (.1) AT5G03160 50 / 6e-07 ATP58IPK homolog of mamallian P58IPK (.1) AT4G39960 50 / 7e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G01390 47 / 4e-06 DNAJ heat shock family protein (.1.2.3.4) AT2G42080 47 / 5e-06 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 47 / 7e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G28480 46 / 8e-06 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114600 [exp] 342 / 3e-120 AT4G07990 216 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.016G088600 [exp] 52 / 2e-07 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1) Potri.009G065500 [exp] 49 / 1e-06 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.001G271300 [exp] 49 / 2e-06 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.005G073900 [exp] 48 / 3e-06 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 48 / 3e-06 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.010G122300 [exp] 47 / 4e-06 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 47 / 6e-06 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 46 / 1e-05 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032795 [exp] 280 / 8e-96 AT4G07990 261 / 2e-88 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012482 [exp] 206 / 1e-67 AT4G07990 189 / 1e-61 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012483 [exp] 67 / 1e-14 AT4G07990 50 / 7e-09 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10036638 [exp] 54 / 4e-08 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10035855 [exp] 54 / 5e-08 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10026498 [exp] 52 / 2e-07 AT5G03160 576 / 0.0 homolog of mamallian P58IPK (.1) Lus10023181 [exp] 51 / 2e-07 AT5G03160 507 / 2e-178 homolog of mamallian P58IPK (.1) Lus10015078 [exp] 51 / 3e-07 AT5G03160 638 / 0.0 homolog of mamallian P58IPK (.1) Lus10019928 [exp] 50 / 4e-07 AT5G03160 637 / 0.0 homolog of mamallian P58IPK (.1) Lus10023148 [exp] 48 / 3e-06 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.005G146600.5 pacid=42803271 polypeptide=Potri.005G146600.5.p locus=Potri.005G146600 ID=Potri.005G146600.5.v4.1 annot-version=v4.1 ATGGGAGGCGAGAAGATTAATCAGAGTAAGGATAATCCCTGGCCGTCGTCTACAAACATGCCACCGCCACCACCCTATCAAGGAAAATCCGAAGACATGA AGCTTTGGGGAGTTGTCATCTTCGGCCTGATTGGGGCCACTGCCACCACTTACGCTGTCAGGCAGCTGCGGCGGACTGTGGATGAGCTGTATGCAGAGTT AAGCAGGTCTCAATCAATGTGGAAAGGAGGATCTGGAACTAGCAAGTCATTCCGGACATATTTTCAGGAGGAAGCGTGGAAAAATTATAATCGTCGAATG CAGGAAGCACATGAAGAGGAAATGGAGAGAGTGGAGCGTATAAGGCGTATGCAAAGCGTGTTTAACCGTGAAAGAAACAAGTTCAAAAGAGACTACGAGA GGTGGAGGGAAAATGGTCCGGGTGCAGATCATCAACATTTTCAGCGTGATGATTGGTATTGGAAGACTGATTCAGCTTTCAGAGACCAGAGGACTAACTT CAGGAGAACTCCAAGGGACAGTGGAAGCTATCCATTATCACATCACTACTCAGTTTTGGGACTTGACAGGTCTAGAACAGCACCATATACTGAAGCTGAG ATTAAGACAGCATTCAGAACCAAGGCAAAGGAGTTTCACCCAGATCAGAACCAAGATAATAAAGAGGCTTCCGAGGCAAAGTTCAAAGAGGTGATGATAT CCTACGAGGCCATTAAGCAAGAAAGAAAGAACACTAAATTTTAA
AA sequence Show only first row Show all	>Potri.005G146600.5 pacid=42803271 polypeptide=Potri.005G146600.5.p locus=Potri.005G146600 ID=Potri.005G146600.5.v4.1 annot-version=v4.1 MGGEKINQSKDNPWPSSTNMPPPPPYQGKSEDMKLWGVVIFGLIGATATTYAVRQLRRTVDELYAELSRSQSMWKGGSGTSKSFRTYFQEEAWKNYNRRM QEAHEEEMERVERIRRMQSVFNRERNKFKRDYERWRENGPGADHQHFQRDDWYWKTDSAFRDQRTNFRRTPRDSGSYPLSHHYSVLGLDRSRTAPYTEAE IKTAFRTKAKEFHPDQNQDNKEASEAKFKEVMISYEAIKQERKNTKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G07990			Chaperone DnaJ-domain superfam...		Potri.005G146600 [exp]	0	1
AT5G55060			unknown protein		Potri.011G089300 [exp]	2.23	0.7561
AT5G02520			unknown protein		Potri.004G077400 [exp]	7.93	0.7233
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G036100 [exp]	17.46	0.7092
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Potri.016G083100 [exp]	19.77	0.6641
AT1G03160		FZL	FZO-like (.1.2)		Potri.002G053332 [exp]	23.36	0.7022
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	26.60	0.7023
					Potri.002G261500 [exp]	26.75	0.7184
AT3G61590		HWS, HS	HAWAIIAN SKIRT, Galactose oxid...		Potri.002G166500 [exp]	30.49	0.6057
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	35.77	0.6751
AT5G15270			RNA-binding KH domain-containi...		Potri.004G100201 [exp]	36.85	0.6778

Compare expression of checked genes

Potri.005G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.