Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-XF1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58440 765 / 0 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) AT4G37760 748 / 0 SQE3 squalene epoxidase 3 (.1) AT2G22830 721 / 0 SQE2 squalene epoxidase 2 (.1) AT5G24150 465 / 5e-160 SQP1, SQE5 SQUALENE MONOOXYGENASE 5, FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G24160 447 / 4e-153 SQE6 squalene monoxygenase 6 (.1) AT5G24140 415 / 2e-140 SQP2 squalene monooxygenase 2 (.1) AT5G24155 64 / 2e-12 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114500 [exp] 921 / 0 AT1G58440 761 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.007G007600 [exp] 796 / 0 AT4G37760 795 / 0.0 squalene epoxidase 3 (.1) Potri.015G120900 [exp] 754 / 0 AT1G58440 745 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014378 [exp] 607 / 0 AT1G58440 603 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.019G014376 [exp] 599 / 0 AT1G58440 575 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G121136 [exp] 587 / 0 AT1G58440 564 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.012G120676 [exp] 169 / 8e-51 AT4G37760 170 / 5e-52 squalene epoxidase 3 (.1) Potri.015G121201 [exp] 116 / 9e-31 AT2G22830 132 / 4e-37 squalene epoxidase 2 (.1) Potri.012G121412 [exp] 55 / 3e-09 AT1G58440 42 / 1e-05 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018654 [exp] 840 / 0 AT1G58440 827 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10007718 [exp] 835 / 0 AT1G58440 828 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10011732 [exp] 768 / 0 AT1G58440 785 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039649 [exp] 768 / 0 AT1G58440 791 / 0.0 SQUALENE EPOXIDASE 1, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01494 [poplar] [flax] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G146700.2 pacid=42804033 polypeptide=Potri.005G146700.2.p locus=Potri.005G146700 ID=Potri.005G146700.2.v4.1 annot-version=v4.1 ATGGCGGATCAGTGCATGCCAGGATGGATCTTAGCTACTCTGTTTGGTCTCTCTGCTATCTATTATTTGGTAACCAAGAAAAAGGAACAGAGAGCTAATA AGGATTTGTTGGAGGCGAGAAGCGAGTCCGTTAATAGCATAGCCACCACCAGTGGAGAATGCAGATCCAGTAATGTTTCCGATGTCGACGTTATCATTGT CGGCGCCGGTGTTGCTGGCGCCGCTCTCGCTCATACTCTTGGCAAGGATGGACGTCAAGTGCATGTCATTGAAAGAGACTTGACTGAGCCTGATAGGATT GTGGGTGAATTTCTACAGCCAGGGGGTTACCTTAAGTTAATTGAATTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAGAGGGTGTTTGGTTATG CACTTTTCAAGGATGGAAAACATACTCGACTCTCTTATCCTTTGGAAAAGTTCCACTCAAATGTAGCTGGAAGGAGCTTTCACAATGGGCGTTTCATACA GAGAATGCGGGACAAAGCTGCGTCCCTCCCCAATGTACAATTGGAGCAAGGAACTGTCATATCTCTACTTGAAGATAAAGGGACTATTAGAGGCGTGCAG TACAAAACAAAAGATGGGCAAGAGCTGAAGGCATTTGCACCTCTGACAATTGTTTGTGATGGCTGTTTCTCAAACCTGCGCCGCTCCCTTTGCAACCCTA AGGTGGATGTGCCCTCTTGTTTTGTTGGCATGGTCCTGGAGAATTGCCAGCTTCCATGTGCAAATCATGCTCATGTTATCTTAGGGGATCCGTCTCCGAT TTTGATGTATCCTATTAGCAGTACCGAGGTCCGCTGTCTGGTTGATGTACCTGGTCAGAAGGTTCCTTCCATTTCAAGTGGTGAAATGGCAAAATATTTG AAGACTGTGGTGGCACCTCAGCTTCCCCCAGAAGTTTATGATGCCTTTCTAGCTGCTGTTGATAAAGGAAATATAAGGACAATGCCAAACAGAAGCATGC CAGCTGCTCCTTATCCTACTCCTGGTGCATTGTTGATGGGTGATGCATTCAACATGCGTCATCCTCTTACCGGGGGAGGAATGACTGTTGCATTGTCTGA CATTGTTGTTTTACGGAATCTTCTCAGGCCTTTGTGCAACCTTAATGATGCACCTACACTCTGCAAATATCTTGAATCTTTCTACACCTTGCGCAAGCCT GTAGCATCCACAATCAATACACTGGCAGGTGCCCTCTACAAGGTTTTTTGTGCTTCACCTGATCAAGCAATGAAGGAAATGCGTCAGGCGTGCTTTGATT ATTTAAGTCTTGGAGGCGTTTTTTCAGCAGGACCCGTGTCTTTGCTCTCAGGCTTAAACCCCCGTCCGTTGAGCTTGGTTGCCCACTTCTTTGCGGTTGC TATATACGGGGTTGGGCGTTTGTTACTGCCATTCCCTTCACCTAAACGCATCTGGATTGGAGCTAGATTGATTTCAGGTGCATCAGGAATCATCTTCCCC ATCATTAGGGCAGAAGGAGTTAGACAGATGTTCTTCCCTGCAACTGTTCCAGCATATTATAGAGCTCCTCCAGTCAAGTGA
AA sequence Show only first row Show all	>Potri.005G146700.2 pacid=42804033 polypeptide=Potri.005G146700.2.p locus=Potri.005G146700 ID=Potri.005G146700.2.v4.1 annot-version=v4.1 MADQCMPGWILATLFGLSAIYYLVTKKKEQRANKDLLEARSESVNSIATTSGECRSSNVSDVDVIIVGAGVAGAALAHTLGKDGRQVHVIERDLTEPDRI VGEFLQPGGYLKLIELGLEDCVEKIDAQRVFGYALFKDGKHTRLSYPLEKFHSNVAGRSFHNGRFIQRMRDKAASLPNVQLEQGTVISLLEDKGTIRGVQ YKTKDGQELKAFAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGMVLENCQLPCANHAHVILGDPSPILMYPISSTEVRCLVDVPGQKVPSISSGEMAKYL KTVVAPQLPPEVYDAFLAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLCNLNDAPTLCKYLESFYTLRKP VASTINTLAGALYKVFCASPDQAMKEMRQACFDYLSLGGVFSAGPVSLLSGLNPRPLSLVAHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFP IIRAEGVRQMFFPATVPAYYRAPPVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	0	1	Pt-XF1.2
AT1G32260			unknown protein		Potri.001G138200 [exp]	1.41	0.8365
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.002G123700 [exp]	1.41	0.8229
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	3.60	0.7570
AT2G01480			O-fucosyltransferase family pr...		Potri.008G130600 [exp]	5.74	0.8110
AT1G76440			HSP20-like chaperones superfam...		Potri.001G243100 [exp]	10.00	0.7341
AT5G40250			RING/U-box superfamily protein...		Potri.001G351466 [exp]	12.24	0.7895
AT5G13500			unknown protein		Potri.009G070000 [exp]	13.78	0.6867
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.013G112200 [exp]	16.43	0.7971
					Potri.002G127201 [exp]	19.79	0.6993
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.010G111800 [exp]	19.97	0.6721

Compare expression of checked genes

Potri.005G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.