Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G07960 1050 / 0 ATCSLC12 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) AT4G31590 887 / 0 ATCSLC5, ATCSLC05 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) AT2G24630 866 / 0 ATCSLC8, ATCSLC08 CELLULOSE-SYNTHASE LIKE C8, Glycosyl transferase family 2 protein (.1) AT3G28180 810 / 0 ATCSLC4, CSLC4, ATCSLC04 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) AT3G07330 791 / 0 ATCSLC6, ATCSLC06 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) AT2G35650 400 / 7e-132 ATCSLA7, CSLA7, ATCSLA07 CELLULOSE SYNTHASE LIKE A7, cellulose synthase like (.1) AT5G03760 399 / 9e-132 ATCSLA9, RAT4, CSLA9, ATCSLA09 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G23480 399 / 4e-131 ATCSLA3, ATCSLA03 cellulose synthase-like A3 (.1.2.3) AT5G22740 397 / 9e-131 ATCSLA2, ATCSLA02 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1) AT4G13410 391 / 2e-128 ATCSLA15 CELLULOSE SYNTHASE LIKE A15, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G114200 [exp] 1313 / 0 AT4G07960 1031 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Potri.018G009300 [exp] 883 / 0 AT4G31590 1077 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.006G270900 [exp] 881 / 0 AT4G31590 1085 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Potri.002G248400 [exp] 795 / 0 AT3G07330 957 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.014G190900 [exp] 770 / 0 AT3G07330 863 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.006G116900 [exp] 409 / 2e-135 AT5G03760 928 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.010G234100 [exp] 409 / 2e-135 AT5G03760 870 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G190701 [exp] 398 / 4e-135 AT3G07330 429 / 5e-148 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Potri.008G026400 [exp] 399 / 8e-132 AT5G03760 854 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007715 [exp] 1084 / 0 AT4G07960 1010 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10018651 [exp] 1053 / 0 AT4G07960 978 / 0.0 CELLULOSE-SYNTHASE LIKE C12, Cellulose-synthase-like C12 (.1) Lus10026923 [exp] 863 / 0 AT4G31590 1078 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039475 [exp] 819 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10020120 [exp] 819 / 0 AT4G31590 1012 / 0.0 CELLULOSE-SYNTHASE LIKE C5, Cellulose-synthase-like C5 (.1) Lus10039440 [exp] 818 / 0 AT3G28180 1035 / 0.0 CELLULOSE-SYNTHASE LIKE C4, Cellulose-synthase-like C4 (.1) Lus10025886 [exp] 794 / 0 AT3G07330 994 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10038217 [exp] 700 / 0 AT3G07330 821 / 0.0 CELLULOSE-SYNTHASE LIKE C6, Cellulose-synthase-like C6 (.1) Lus10008646 [exp] 402 / 7e-133 AT5G03760 890 / 0.0 RESISTANT TO AGROBACTERIUM TRANSFORMATION 4, CELLULOSE SYNTHASE LIKE A9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009387 [exp] 396 / 4e-130 AT5G22740 892 / 0.0 CELLULOSE SYNTHASE-LIKE A 2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE A02, cellulose synthase-like A02 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.005G146900.1 pacid=42802624 polypeptide=Potri.005G146900.1.p locus=Potri.005G146900 ID=Potri.005G146900.1.v4.1 annot-version=v4.1 ATGGCACCCTTGTTTGACTGGTGGGCAAAGGACAGCCATAGAGGAACACCGGTTGTAGTCAAAATGGAGAACCCAAACTGGTCAATGGTGGAGCTTGAAG GTCCATCAGAGGAAGACTTCTTAATCACTGACTCACCGAGTCGGCTCGGCCGCGACAAATCACGTAACAAAAACGCTAAACAACTTACATGGGTCCTTCT CTTAAAAGCCCACAAGGCTGCCGGTTGCTTGACCTCCATTGCCACCGCAATGGTCACTCTCGGCTCCGCTATCAAGCGCCGCATCCACTCTGGCCGCACG GACATCGAAACCACCGACATCGACCGGGAAAATGAGAACCCAACAGTGAAAACTAGATTCTATACTTTCATCAAGATTTTTCTTTGGCTGTCAGTTTTGC TGTTAGGATTTGAAGTTGCTGCTTATTTTAAGGGGTGGCATTTCGGAGCTCCACATCTGCAATTGCAGTACTTATTAGCGATGCCATTTGGGTTTCAAGA TATCTTTGATTCCTTGTATTCACGGTGGGTTTTGTTTCGTGTGGAGTATCTTGCTCCTCCTTTGCAATTTCTAGCCAATGCGTGTATCGTGCTCTTCCTT GTCCAGAGTATTGACAGGCTTGTTCTTTGTTTGGGTTGTTTCTGGATCCGGTTTAAGAATATTAAACCAATCCCAAATCAAGACGCTGTTGCTGATCTTG AATCTGGTGAAAATGGATTTTTTCCCATGGTTCTTGTCCAGATTCCCATGTGCAATGAGAAAGAGGTTTACCAACAATCTATAGCTGCTGTGTGTAATTT AGACTGGCCGAAATCGAAGATTTTAGTACAAATTCTAGATGATTCTGATGATCCAACTACGCAATTGTTGATTAAAGAGGAGGTTAATAAATGGCAGCAA GAGGGTGCCCACATTTTGTATAGGCATCGTGTAATTAGAGATGGCTATAAAGCTGGTAATCTCAAGTCTGCTATGAATTGTAGCTATGTCAAAGACTATG AATTTGTGGCTATTTTCGATGCCGATTTCCAGCCAACCCCCGACTTTCTTAAAAGAACAGTCCCTCACTTCAAGGGTAATGAGGAGCTAGGGCTTGTCCA GGCAAGGTGGTCTTTTGTGAACAAGGATGAGAACTTGTTGACTAGGTTGCAGAACATTAATTTAGCATTTCATTTCGAAGTAGAGCAGCAAGTGAATGGT ATTTTCATTAACTTCTTTGGATTCAATGGGACTGCTGGGGTGTGGAGGATAAAAGCTTTGGAAGATTCTGGTGGTTGGTTAGAGAGGACTACTGTTGAGG ACATGGACATTGCTGTTCGTGCCCATCTTCATGGCTGGAAATTCATTTTCCTCAATGATGTTGAGTGTCAGTGTGAATTGCCTGAATCATATGAAGCATA TAGAAAGCAACAACACAGATGGCATTCTGGACCCATGCAGCTGTTCAGACTCTGTTTACCTGCTATTATTCGATCCAAGATTAGCATATGGAAGAAATTC AACATGGTTTTTCTCTTCTTTCTGCTTAGAAAGCTTATCCTACCATTTTATTCTTTCACACTCTTCTGCATAATTCTCCCCATGACAATGTTTATACCAG AGGCTGAGCTCCCAGCATGGGTTGTGTGTTACATTCCAGCTACCATGTCATTTCTCAACATTCTCCCAGCCCCCAAATCCTTCCCTTTCATTGTCCCTTA CCTTCTGTTTGAAAACACTATGTCAGTGACCAAGTTCAATGCTATGATCTCTGGCCTATTCCAGCTTGGAAGTGCCTATGAATGGGTTGTTACTAAGAAG TCTGGCCGCTCTTCTGAGGGTGATCTTGTTTCCTTGGCGAAGAAAGAGACAAAGCATCAAAGGGGTTCTTCAGAGCCAAATCTTGAAGAATTGAAGGAAG AAATTATGCAACAAGATCAAAAGGACAAGAAGAAAAAGAAGCATAATAGAATATATATGAAAGAGTTGGCACTGGCTTTCCTTCTTTTAACAGCTTCAGC AAGGAGTTTGCTTTCTGCTCAGGGGATTCATTTCTACTTCTTGCTATTTCAAGGGATATCATTCTTGCTTGTTGGCCTAGATTTGATAGGCGAGCAGGTT CAGTGA
AA sequence Show only first row Show all	>Potri.005G146900.1 pacid=42802624 polypeptide=Potri.005G146900.1.p locus=Potri.005G146900 ID=Potri.005G146900.1.v4.1 annot-version=v4.1 MAPLFDWWAKDSHRGTPVVVKMENPNWSMVELEGPSEEDFLITDSPSRLGRDKSRNKNAKQLTWVLLLKAHKAAGCLTSIATAMVTLGSAIKRRIHSGRT DIETTDIDRENENPTVKTRFYTFIKIFLWLSVLLLGFEVAAYFKGWHFGAPHLQLQYLLAMPFGFQDIFDSLYSRWVLFRVEYLAPPLQFLANACIVLFL VQSIDRLVLCLGCFWIRFKNIKPIPNQDAVADLESGENGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKILVQILDDSDDPTTQLLIKEEVNKWQQ EGAHILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKGNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNG IFINFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIIRSKISIWKKF NMVFLFFLLRKLILPFYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKK SGRSSEGDLVSLAKKETKHQRGSSEPNLEELKEEIMQQDQKDKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQV Q

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	0	1
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Potri.007G104300 [exp]	1.00	0.9464
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	1.41	0.9295	Pt-ATCSLC12.1
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	2.00	0.9022
AT4G23020			unknown protein		Potri.001G110900 [exp]	3.00	0.8730
AT3G24630			unknown protein		Potri.018G082300 [exp]	3.46	0.8933
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Potri.003G072700 [exp]	3.74	0.8834	Pt-MPE3.1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	4.35	0.8293
AT2G27080			Late embryogenesis abundant (L...		Potri.004G197600 [exp]	4.47	0.8934
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	4.58	0.9032
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	4.69	0.8265

Compare expression of checked genes

Potri.005G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.