Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80550 547 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 204 / 1e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15200 185 / 9e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 160 / 8e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 156 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 149 / 3e-40 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 149 / 1e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 146 / 9e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 145 / 6e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 143 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053600 [exp] 235 / 4e-71 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 206 / 2e-60 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 167 / 3e-46 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 166 / 8e-46 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 158 / 5e-43 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 156 / 2e-42 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 154 / 2e-41 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 147 / 3e-38 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 144 / 6e-38 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037555 [exp] 513 / 0 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011439 [exp] 509 / 1e-179 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 213 / 2e-62 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031837 [exp] 201 / 8e-59 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 187 / 2e-53 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 166 / 9e-46 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011459 [exp] 159 / 3e-43 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 157 / 1e-42 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 157 / 2e-42 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041669 [exp] 154 / 4e-41 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G147200.1 pacid=42805540 polypeptide=Potri.005G147200.1.p locus=Potri.005G147200 ID=Potri.005G147200.1.v4.1 annot-version=v4.1 ATGAACTCTTCGATACTTACTAGACGCCTAAACCCCGCTAAAACCCTCCTCCTTCCATACTCAACAAATACCCCCACTTTTCATTTCCATTCCCGAACCC CAAATCCCCCACAATCAGATCCACTAAATCTTGACTCCAGCACTGTTTTTCAAACCCTGTCATGTTACAACAATGACTGGAAACGAGCTCTGGATTTCTT CAACTGGGTGGAAACTGAATCCCAATTTCAGCACACAACAGAGACTTACAATCGCATGATTGACATCTTGGGTAAGTTCTTTGAATTCGATTTATCATGG GACTTGATTCAGAGAATGAGAAATAACCCTTTTTCAACGCCTAATCATACTACCTTTCGTGTATTGTTTCATCGTTATATATCTGCTCATCTTGTTAATG AAGCAGTAAGTGTTTATGAGGATAGATTAAAAGAATTCGGTTTAAAAGACGAGACGTCTTATTGTATTCTTGTTGATGCACTTTGTGAGTACAAGCATGT TATAGAAGCACATGAACTGTGTTTTGGAAATAACAATAACAGCATCAATGTTAGGAATATAACAAAGATTTATAATATGATTTTACGCGGGTGGTTTAAG ATGGGTTGGTGGGGTAAGTGTAGGGAGTTCTGGGAGGAGATGGATAGGAAAGAAGTTTGTAAGGACTTGCATTCATATTCCATATACATGGATATACTGT GCAAAAGTGGGAAGCCTTGGAAAGCGGTGAAATTGTATAAAGAGATGAAGAGTAAGGGAATAAAGCTGGATGTTGTGGCATATAATACGGTTATTAATGC CATTGGTTTATCAGAGGGTGTGGATTTCGTCTTGAGGGTTTATCGTGAAATGAGGGAATTGGGTTGTCAGCCGAATGTTGTGACTTGTAATACGGTGATA AAGCTTTTGTGTGAAAATGGGAGGATAAAGGAAGCCTATAAAATGCTGGATGAAATGCCCCAGTCATATATTGCCCCTGATGTCTTCACTTATCATTGTT TCTTTAGGTGTCTTGAGAAGCCAAAAGAGATTCTTTGTCTTTTCGATCAGATGATTGAGAATGGGGTTTGCCCAAGGATGGACACATATGTAATGCTAAT GAGAAAGTTTGGAAGATGGGGATTTCTTCGACCAGTTTTTTTAGTGTGGAAGAAAATGGAGAAACTTGGGTGCAGTCCAGATGAATTTGCATATAATGCT TTAATTGATGCTCTAATTCAAAAGGGCATGGTAGATATGGCTAGAAAGTATGATGAAGAGATGATGGCAAAAGGTCTTTCAGCAAAGCCCAGGGTAGAGT TAAATACAACCGAAGGATAA
AA sequence Show only first row Show all	>Potri.005G147200.1 pacid=42805540 polypeptide=Potri.005G147200.1.p locus=Potri.005G147200 ID=Potri.005G147200.1.v4.1 annot-version=v4.1 MNSSILTRRLNPAKTLLLPYSTNTPTFHFHSRTPNPPQSDPLNLDSSTVFQTLSCYNNDWKRALDFFNWVETESQFQHTTETYNRMIDILGKFFEFDLSW DLIQRMRNNPFSTPNHTTFRVLFHRYISAHLVNEAVSVYEDRLKEFGLKDETSYCILVDALCEYKHVIEAHELCFGNNNNSINVRNITKIYNMILRGWFK MGWWGKCREFWEEMDRKEVCKDLHSYSIYMDILCKSGKPWKAVKLYKEMKSKGIKLDVVAYNTVINAIGLSEGVDFVLRVYREMRELGCQPNVVTCNTVI KLLCENGRIKEAYKMLDEMPQSYIAPDVFTYHCFFRCLEKPKEILCLFDQMIENGVCPRMDTYVMLMRKFGRWGFLRPVFLVWKKMEKLGCSPDEFAYNA LIDALIQKGMVDMARKYDEEMMAKGLSAKPRVELNTTEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80550			Pentatricopeptide repeat (PPR)...		Potri.005G147200 [exp]	0	1
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	4.69	0.9278
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Potri.009G037600 [exp]	5.09	0.9324	CRR2.1
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	9.16	0.9226
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	10.39	0.9258
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	10.58	0.9012
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	10.58	0.9110
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	11.40	0.9183
					Potri.002G246900 [exp]	14.69	0.8932
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	16.43	0.9038
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.009G109001 [exp]	16.52	0.9121

Compare expression of checked genes

Potri.005G147200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.