Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22560 828 / 0 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 343 / 2e-103 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 336 / 4e-100 Kinase interacting (KIP1-like) family protein (.1) AT1G58210 317 / 3e-91 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT3G22790 134 / 1e-31 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 129 / 5e-30 kinase interacting (KIP1-like) family protein (.1) AT1G03080 125 / 5e-29 kinase interacting (KIP1-like) family protein (.1) AT4G02710 117 / 1e-26 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 104 / 5e-23 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 99 / 3e-21 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 1545 / 0 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 356 / 5e-107 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.010G083300 [exp] 138 / 8e-33 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 133 / 3e-32 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 132 / 6e-31 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 129 / 4e-30 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 107 / 9e-24 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 105 / 4e-23 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G164200 [exp] 97 / 1e-21 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035944 [exp] 497 / 3e-159 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 496 / 9e-158 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 495 / 9e-157 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 491 / 7e-156 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10001866 [exp] 252 / 4e-71 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10032844 [exp] 249 / 3e-70 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10039359 [exp] 134 / 2e-31 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 124 / 2e-28 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 122 / 8e-28 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 115 / 7e-26 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G147300.2 pacid=42805628 polypeptide=Potri.005G147300.2.p locus=Potri.005G147300 ID=Potri.005G147300.2.v4.1 annot-version=v4.1 ATGTTGCAGAGAGCTGCAAGCAATGCTTACTCGTGGTGGTGGGCAAGCCACATCCGAACAAAGCAATCTAAATGGCTCGAGCAAAACCTTCATGATATGG AAGATAAGGTTCAAAACGTGCTCCAACTTATTGAAGAAGATGGAGACTCTTTTGCCAAGAGGGCTGAAATGTACTACAAAAAGAGACCAGAGCTGATACA CTTCGTTGAAGACTCTTACCGAGCTTATCGGGCATTAGCTGAACGGTATGACCACATATCAACAGAGCTACAAAATGCCAACAATACCATTGCTTATGTT TTCCCAGAACAAGTCCAGTTTGCAATGGAAGAAGATGGAGATGAGACCCCATCTAAATTTGCAAAGAAGCTTCCAGAAATCTCAAAAGCAAATATTCCCA AGGTCCCAAAGATTCCTAAAGATATAAAGGGTATCATCACATCAGCTTCAAAGAAGCTGCAATCAAAGAAGTCAATGAAAGGAGCAAGGAATGCAACAGT TGCCAAGTCTGGTTTGAGCAAATCCGAGGGACTCCAAGAGATTGACAAAATTCAGAAAACAATCCTGGCTCTACAAACTGAAAAAGAGTTTGTGAAGAGT TCTTATGACAGCAGACTTGCCAAGTATTGGGAAATTGAGCTTCAGATCAGGGAAATGCAGGAGAAGGTTTGTAATCTGCAAGATGAATTTGGTGCAGGCA TGGTCATTGAAGACAACGAAGCTCGGAAATTGATCGCATCGGCAGCCCTGAAATCATGCCAAGAGACATTGACTCTGTTGCAGGAGAGACAAGAGAGATC TGCAGAAGAAGCAGTAGAAGAGCGGGAAAGAATCAACAATGCCCGGGGGAAGTTGAAGTCTCTCAAGGATGAGTTTTTGCATGGTGAGATCAATCCAGAA AATCCTGAAGCCAAAGATGAACCTTTAAAAGGAGTAGAAGGATTGGATAGTATATATCAAGGAGTGAGCAGTGATACAGAAGAGAGACAGGATATGGAGT TGTTGCGTGAGAAGATTAAGGAAAACTTCGAGGTTGGATCTAGTGCATGTGTCACCATGGGAGAACTTGCTGAGAAGATCGATAAACTTGTAAACAACAT CATTAACTTGGAAGCTTCAGTTTCATCACAGACAGCTCTTATACAGAGGTTAAGGTTGGAGACAAATGAACTGCAAGCAGAAATTCAAACTTTAGAAGAA GACAAGGAAATATTATTCAATGGCAAAAATGATTTGAGGGAACAGCTTAGGGAAATGGAGGAGAAATTGTATGGACTCCAGGATCTAAAACAGAGTGTTG AGCACCAGAATAACAACCTTCAGGCACATTTTACTGAAGCTCGTTCTAATATCGACCACCTCTCTGAAAAATTGCTGTCTGTAAAATCAGATGAGGAATT CGAGGTCAAACCTGAAACAGGGGACAGATCACTGGTAAAAGTTGAATCACAAGAAGTTGCACTCAATCCTGATGATAGCCTTGAGAAACATCAGAATGTG AAGACAAAAGAGATGCACGAGCTCAAGGTTGGTAAATCCCATGAAGATTCCAAGGGATCAGAAGATGCACTAAATCCTGATGAGAGTCTTGGGGTACAAC AAAATCTGAAGCCACGTCACGAGCTCAAGGTTTCATATTCTTCAGAGAAAGGAAAGGAATATCCTGCGGAATCCAGTTTCTTTGCGGAGTTAAAGGAACA AGAAGATAAAATGAATGATGCTGATAGTTCTATAAAGACTACAGGGATTAAAAGAGAAGATGAAGAGATAAAAGAGCATGGGCAAAATTCAAGTCAACCC AAGAAAACTATTGACCTCAACAATTCTCTGGAGGAACTTAGTGGCCTGGAAATTGAAGAAAAAACTGCTAAGAAAGACTCACCTTCACCGATGGATGATC TCAATGTTGAAATATGGGAACAGGAAACAATGCTAGTTGATGAGCCAGACTGGAAGCAGTTGTTCATGAATGGTATGGAGAATAGAGAAAAAGTACTGTT GACAGAGTATACTACAATTCTTCGGAATTACAAGGAAATAAAGAAGCAGCTTACTGAAGCAGAAAAGAAGAATGGAGATAGCCTCTTTGATGCAACAGTG CAGGTAAGAGAGTTGAAGAGTGCTAATGCAAAGAAGGATGAACAGATTCAATTTCTACGCCAGAAGCTGATCCTTCTTCAAGCAGGCTTGGGTGAAGATA GCAAACCTGTAGAATCAATGGTGACAGAACAAGAAGTAACAGGAGACATCAATGTGATTCTATTGGACCAACCAGAAACTACCTCAGAAATCGAAGATCG ATTCCGGATGAACATTGATGAAGTTCTAGAAGAGAACTTGAATTTCTGGTTAAGGTTCAGCACTACATTCCAACAAATACAGAAATTTGAAACTGAAGTT CAAGATCTACAGTCTGAGTTGTTCAAACTAGAGGAAAAGCAAAAGATTCAAGATGGGAGTAGTAATGCAAAATATTCTTTGAAATCAGATGCGCGACCAC TATACAAGTACCTTAGAGAGATACATACTGAACTGACAGTCTGGTTAGAGAAAAGCATGCAACTGAAAGATGAAGTGAAGAGCAGATTTGCATCTTTGTG CGACATTCAAGATGAAATAACAGCTGTATTGAAGGAGAGTGCTGAAGATGATGAGTTCAGGTTTACAAGCTATCAAGCTGCTAAGTTCCAAGGAGAGATT TTGAACATGAAACAAGAGAATAACAAGGTTGCAGATGAATTGCAGGCAGGCTTAGATCACATAACAACACTCCAACTCGAAGTTGAAAGAACACTGGAAA AATTGAACGAGGAATTTAAGCTTTCCGGATCAAAGCACCGTCAAAATATCCAGCTTCCACACTCAGAAACTCGATCTCGAGTTCCTTTGCGGTCGTTCAT CTTTGGCATAAAACCCAAAAAGCAAAAGAATTCAATCTTTTCTCGCATGCACCCTGCAATGAATAGGAGACATCTAAGATCAGGACCTAACGTGTAA
AA sequence Show only first row Show all	>Potri.005G147300.2 pacid=42805628 polypeptide=Potri.005G147300.2.p locus=Potri.005G147300 ID=Potri.005G147300.2.v4.1 annot-version=v4.1 MLQRAASNAYSWWWASHIRTKQSKWLEQNLHDMEDKVQNVLQLIEEDGDSFAKRAEMYYKKRPELIHFVEDSYRAYRALAERYDHISTELQNANNTIAYV FPEQVQFAMEEDGDETPSKFAKKLPEISKANIPKVPKIPKDIKGIITSASKKLQSKKSMKGARNATVAKSGLSKSEGLQEIDKIQKTILALQTEKEFVKS SYDSRLAKYWEIELQIREMQEKVCNLQDEFGAGMVIEDNEARKLIASAALKSCQETLTLLQERQERSAEEAVEERERINNARGKLKSLKDEFLHGEINPE NPEAKDEPLKGVEGLDSIYQGVSSDTEERQDMELLREKIKENFEVGSSACVTMGELAEKIDKLVNNIINLEASVSSQTALIQRLRLETNELQAEIQTLEE DKEILFNGKNDLREQLREMEEKLYGLQDLKQSVEHQNNNLQAHFTEARSNIDHLSEKLLSVKSDEEFEVKPETGDRSLVKVESQEVALNPDDSLEKHQNV KTKEMHELKVGKSHEDSKGSEDALNPDESLGVQQNLKPRHELKVSYSSEKGKEYPAESSFFAELKEQEDKMNDADSSIKTTGIKREDEEIKEHGQNSSQP KKTIDLNNSLEELSGLEIEEKTAKKDSPSPMDDLNVEIWEQETMLVDEPDWKQLFMNGMENREKVLLTEYTTILRNYKEIKKQLTEAEKKNGDSLFDATV QVRELKSANAKKDEQIQFLRQKLILLQAGLGEDSKPVESMVTEQEVTGDINVILLDQPETTSEIEDRFRMNIDEVLEENLNFWLRFSTTFQQIQKFETEV QDLQSELFKLEEKQKIQDGSSNAKYSLKSDARPLYKYLREIHTELTVWLEKSMQLKDEVKSRFASLCDIQDEITAVLKESAEDDEFRFTSYQAAKFQGEI LNMKQENNKVADELQAGLDHITTLQLEVERTLEKLNEEFKLSGSKHRQNIQLPHSETRSRVPLRSFIFGIKPKKQKNSIFSRMHPAMNRRHLRSGPNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22560			Kinase interacting (KIP1-like)...		Potri.005G147300 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.016G051900 [exp]	2.82	0.9199
AT5G13890			Family of unknown function (DU...		Potri.010G067000 [exp]	3.16	0.8948
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	3.87	0.8902
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Potri.002G253200 [exp]	5.91	0.8665
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	6.63	0.8794
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	13.03	0.8735
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.016G085900 [exp]	13.19	0.8730
					Potri.007G007000 [exp]	15.19	0.8527
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.005G201800 [exp]	15.87	0.8242
AT4G22560			unknown protein		Potri.001G121600 [exp]	16.73	0.8550

Compare expression of checked genes

Potri.005G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.