Plant FIBer expression Database

Potri.005G147400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22570 349 / 5e-123 NIC2, ATNIC1 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G116100
[exp]
354 / 6e-125 AT2G22570 337 / 4e-118 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035945
[exp]
372 / 4e-132 AT2G22570 342 / 3e-120 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00857 Isochorismatase Isochorismatase family
Representative CDS sequence
>Potri.005G147400.4 pacid=42802444 polypeptide=Potri.005G147400.4.p locus=Potri.005G147400 ID=Potri.005G147400.4.v4.1 annot-version=v4.1
ATGATGTCGCAGACGATAGATTTGTTAAAGAAGGAGCTTCCTGTTGAAGAGGGAAGGCTGCCTCTGAACGGAGATGGAGCTAAGACTACTGGTCTGGTCT
TGGTCGATCTTGTTAATGGCTTTTGTACTGTTGGTGCTGGCAATTTGGCCCCAAAAGTGGCAGATAAGCAAATATCAGAAATGGTGGAGGAATCAGCGAG
GATTGCTAGATTATTCTGTGAAAAGAAATGGCCTGTTTTTGCCTTTCTTGATACCCATCATCCTGATATACCCGAGCATCCTTACCCTCCTCATTGCATT
CTAGGAACTGATGAAGCAAATCTTATTCCTGCCCTTCAATGGTTAGAGAATGATCCCAGTGCAACTCTTCGCCGCAAGGATTGTATTGATGGATTCCTTG
GTTCAATTGACAAACATGATGGTTCCAATGTCTTTGTTGATTGGGTTCGAAATAATGACATCAAACTTCTACTGGTTGTAGGGATATGCACAGATATATG
TGTCCTGGATTTTGTTTCTTCGGCCTTATCTGCCAGAAATCGTGGCTTTCTTTCTCCTCTAGAGGATGTGGTTGTGTATTCTCGTGCTTGTGCAACCTAT
GATCTTCCACTTCACATTGCCGAAACTCTCAAAGATACCATAGCACACCCACAGGAGCTGATGCATCACATAGGCCTCTATATGGCCCAGGGAAGGGGAG
CTAAGGTAGTATCAGAGGTTTCTTTTGGTGCATTGCCATAG
AA sequence
>Potri.005G147400.4 pacid=42802444 polypeptide=Potri.005G147400.4.p locus=Potri.005G147400 ID=Potri.005G147400.4.v4.1 annot-version=v4.1
MMSQTIDLLKKELPVEEGRLPLNGDGAKTTGLVLVDLVNGFCTVGAGNLAPKVADKQISEMVEESARIARLFCEKKWPVFAFLDTHHPDIPEHPYPPHCI
LGTDEANLIPALQWLENDPSATLRRKDCIDGFLGSIDKHDGSNVFVDWVRNNDIKLLLVVGICTDICVLDFVSSALSARNRGFLSPLEDVVVYSRACATY
DLPLHIAETLKDTIAHPQELMHHIGLYMAQGRGAKVVSEVSFGALP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22570 NIC2, ATNIC1 A. THALIANA NICOTINAMIDASE 1, ... Potri.005G147400
[exp]
0 1
AT3G07870 F-box and associated interacti... Potri.002G223000
[exp]
7.93 0.7908
AT5G13190 AtGILP GSH-induced LITAF domain prote... Potri.003G165900
[exp]
18.89 0.6813
AT1G14370 Kin1, PBL2, APK... PBS1-like 2, kinase 1, protein... Potri.009G020700
[exp]
19.67 0.7729
AT1G21080 DNAJ heat shock N-terminal dom... Potri.002G000300
[exp]
25.39 0.6856
AT1G29690 CAD1 constitutively activated cell ... Potri.004G064000
[exp]
27.20 0.7094
AT5G25930 Protein kinase family protein ... Potri.006G235450
[exp]
27.23 0.7480
Potri.006G092300
[exp]
33.40 0.6894
AT3G01320 SNL1 SIN3-like 1 (.1.2) Potri.001G316300
[exp]
37.14 0.7517
AT1G65910 NAC ANAC028 NAC domain containing protein ... Potri.014G041300
[exp]
39.11 0.7201
AT5G50460 secE/sec61-gamma protein trans... Potri.012G098400
[exp]
40.79 0.6929 SEC61.1

Potri.005G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.