Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 653 / 0 Exostosin family protein (.1) AT4G16745 269 / 1e-84 Exostosin family protein (.1.2) AT5G11610 262 / 4e-82 Exostosin family protein (.1.2) AT5G03795 246 / 3e-76 Exostosin family protein (.1) AT3G07620 236 / 8e-73 Exostosin family protein (.1) AT5G25310 229 / 5e-70 Exostosin family protein (.1) AT5G19670 230 / 3e-69 Exostosin family protein (.1) AT5G25820 230 / 8e-69 Exostosin family protein (.1) AT4G32790 228 / 9e-69 Exostosin family protein (.1) AT5G11130 221 / 7e-67 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058400 [exp] 711 / 0 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 390 / 5e-134 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 363 / 4e-123 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G117600 [exp] 353 / 8e-120 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.007G116800 [exp] 343 / 5e-115 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.019G036500 [exp] 279 / 2e-89 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.003G079000 [exp] 262 / 4e-82 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G118000 [exp] 249 / 2e-77 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.001G072500 [exp] 243 / 1e-75 AT4G38040 232 / 2e-71 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 669 / 0 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 669 / 0 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 256 / 1e-79 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 247 / 4e-76 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 241 / 7e-74 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 234 / 1e-73 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10025178 [exp] 232 / 5e-71 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10011121 [exp] 230 / 5e-71 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 233 / 1e-70 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10023927 [exp] 232 / 1e-70 AT5G25820 561 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.005G147500.1 pacid=42802398 polypeptide=Potri.005G147500.1.p locus=Potri.005G147500 ID=Potri.005G147500.1.v4.1 annot-version=v4.1 ATGACGGCCGGAAAGCTGTCCCAACAATTACAGCAACAGCAACAAGTACAGCAATCCATGTGTTCTTTGAAAGGATCCCTCCGCACTCTGGCAATCCTAA CGCTCGTCTCTTTCACATACCTTTCTTTCAATTCTCTCCATTCCTCTTATTTTTCTTCTTCTTCTTCCATCTCCGCATCTTCCGTTTCTTTAGCGCCGGC GACCAAGAAGACGACTATATTGGTTAAAGATTACGACGACGACGAGATATCCGATCTGTACCATTCGCCACGTGTATTCAAATTGAATTATGAGGAAATG GAGAGGAATTTCAAGATTTTTATATATCCAGATGGAGATCCAAATACATTTTATCAAACACCTAGGAAACTGACTGGCAAATACGCGAGCGAAGGGTACT TTTTCCAGAATATAAGAGAGAGCAGGTTTCAAACACAGGATCCTGATCAAGCCCACCTATTTTTTATTCCCATCTCCTGCCACAAGATGCGCGGCAAGGG AATATCTTATGAGAATATGACCATTATTGTTGATAATTATGTGGAAAGCTTGAAATCCAAGTATCCCTATTGGAATAGAACATTGGGTGCTGATCACTTT TTCGTCACTTGTCATGATGTTGGTGTAAGAGCCACTGAAGGAGTTCCGTTTCTCATAAAGAATGCAATCAGAGTGGTGTGCTCCCCTAGCTATGATGTCG GGTTCATTCCACACAAAGATATTGCTCTTCCTCAGGTCCTCCAGCCATTTGCCCTTCCTGCTGGAGGAAATGATGTAGAGAAGAGGACAACTCTTGGTTT TTGGGCTGGCCATCGAAACTCTAGAATTAGAGTTATACTAGCACGTGTGTGGGAGAATGATACAGAACTAGATATTTCAAACAACAGAATAAATAGGGCT ACTGGACATCTTGTCTATCAGAAGAGGTTTTATGGATCTAAATACTGTATATGCCCTGGTGGATCTCAGGTTAACAGTGCACGCATAGCTGACTCAATCC ATTATGGATGTATTCCTGTAATATTGTCCAACTATTATGACCTGCCATTCAATGACATTCTTGATTGGCACAAATTTTCCGTCATACTTAAGGAGCAGGA TGTGTACCGACTCAAGCAAATTCTGAAGGACATACCCGACAATAAGTTGGTTTCACTGCATAAGAATTTAGTGAAGGTACAGAAGCATTTCCAGTGGAAT TCGCCCCCTGTCAAATATGATGCATTCCATATGGTCATGTATGATCTCTGGCTGCGCCACCATGTGATCAAATACTAG
AA sequence Show only first row Show all	>Potri.005G147500.1 pacid=42802398 polypeptide=Potri.005G147500.1.p locus=Potri.005G147500 ID=Potri.005G147500.1.v4.1 annot-version=v4.1 MTAGKLSQQLQQQQQVQQSMCSLKGSLRTLAILTLVSFTYLSFNSLHSSYFSSSSSISASSVSLAPATKKTTILVKDYDDDEISDLYHSPRVFKLNYEEM ERNFKIFIYPDGDPNTFYQTPRKLTGKYASEGYFFQNIRESRFQTQDPDQAHLFFIPISCHKMRGKGISYENMTIIVDNYVESLKSKYPYWNRTLGADHF FVTCHDVGVRATEGVPFLIKNAIRVVCSPSYDVGFIPHKDIALPQVLQPFALPAGGNDVEKRTTLGFWAGHRNSRIRVILARVWENDTELDISNNRINRA TGHLVYQKRFYGSKYCICPGGSQVNSARIADSIHYGCIPVILSNYYDLPFNDILDWHKFSVILKEQDVYRLKQILKDIPDNKLVSLHKNLVKVQKHFQWN SPPVKYDAFHMVMYDLWLRHHVIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	0	1
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	4.47	0.8158
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	5.74	0.8593
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	5.91	0.8225
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	11.09	0.8402
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	12.72	0.8230
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	13.41	0.7503	GMD1.1
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	14.00	0.7327
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	16.30	0.8556
AT4G33380			unknown protein		Potri.014G031900 [exp]	16.58	0.7539
AT2G38840			Guanylate-binding family prote...		Potri.002G046000 [exp]	16.73	0.8262

Compare expression of checked genes

Potri.005G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.