Plant FIBer expression Database

Potri.005G147600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38020 335 / 6e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT5G15390 56 / 1e-08 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
AT2G19870 51 / 1e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G122300
[exp]
60 / 8e-10 AT5G15390 430 / 9e-152 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Potri.018G087800
[exp]
50 / 1e-06 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035953
[exp]
382 / 2e-132 AT4G38020 374 / 2e-129 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10025709
[exp]
337 / 1e-115 AT4G38020 337 / 2e-115 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10011129
[exp]
50 / 1e-06 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Lus10043030
[exp]
50 / 1e-06 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0098 SPOUT PF00588 SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence
>Potri.005G147600.2 pacid=42802594 polypeptide=Potri.005G147600.2.p locus=Potri.005G147600 ID=Potri.005G147600.2.v4.1 annot-version=v4.1
ATGCAGAGCGCGTACGCATCCGGTTCCTGGATATCAGCTCAAGCTTGTGTAAAACTCCGAAACTCGAAGGCAAAGCTAACAACTGAAACCTATTATTATA
ATTGCTTTGACAATGCAGGAGGAGGAGGCGGCGGCGGCGGCGGCGATAATTCAAGATTTGCATTACCAATACCAAGAATAATAATAAAGACAGCAGCAGC
AGGAGGTCATGTAAAATCAATAACAAGCACTTCAAACCCTTTTGTGAAGCACTGTCTCAAGCTCCAACAAAACTCCTCTTATCGCCACTCTCATGCTTCA
GCTCTTGTTGTGGGTTCTACCCCTATCAGGGAGATACACAGATCTCAAGAGTCCTTGAAAGAAAGGACCGTTGAATTGGAATATTTACTTCTTCTTGATG
AAGCAGAGGTCTCCCAAGTCCTCGACGACAAGTCCTCTGCTCGTGTTGTGCGTGTGAGCTCTGTCGTGATGAAAAAGCTTTCACAGTTGCAATCTACTGA
ATCTGTTGATGCTATTGCTCTCATGAAATTTCCTACCACCTATTTTGTTGTAGACAATCATCAAGATTGTAGCCGGAAATGGTTCCCATCTCCGCACCGA
ATTTTAGTCCTCGAGGGAATCCAGGATCCAGGTAACCTTGGTACATTACTCAGATCAGCTTTGGCATTGGGATGGGGTGGTGTGTTCTTACTTCCCGGTT
GTTGTGATCCATTCAATAGTAAAGTCCTCCGAGCTAGCCGAGGAGCGTCCTTTCAGATCCCCATAGTTTCCGGCAGTTGGTATCATCTTGAAGCTCTCAA
AGATGAATACCAGATGAAGATGCTAGCTGGCCATCCAGACTGTAATGACAAATCGAGACCCGTGTCACAGCTATCTCAAGGGCTTGCAGATTGTTTTGCC
AGGGTACCATTGTGCTTGGTTTTGGGTAGCGAAGGGCATGGCCTTTCAGAAAAAGCTCAACGTGAATGTGAGCTTTTGAGTATACCAATGGCAGGAGAGT
TTGAGTCTCTCAATGTCGCAGTTGCTGGAGGCATTTTCTTATACATGTTACAGCCGAAAAGCCAAAAAATTGTTTAA
AA sequence
>Potri.005G147600.2 pacid=42802594 polypeptide=Potri.005G147600.2.p locus=Potri.005G147600 ID=Potri.005G147600.2.v4.1 annot-version=v4.1
MQSAYASGSWISAQACVKLRNSKAKLTTETYYYNCFDNAGGGGGGGGGDNSRFALPIPRIIIKTAAAGGHVKSITSTSNPFVKHCLKLQQNSSYRHSHAS
ALVVGSTPIREIHRSQESLKERTVELEYLLLLDEAEVSQVLDDKSSARVVRVSSVVMKKLSQLQSTESVDAIALMKFPTTYFVVDNHQDCSRKWFPSPHR
ILVLEGIQDPGNLGTLLRSALALGWGGVFLLPGCCDPFNSKVLRASRGASFQIPIVSGSWYHLEALKDEYQMKMLAGHPDCNDKSRPVSQLSQGLADCFA
RVPLCLVLGSEGHGLSEKAQRECELLSIPMAGEFESLNVAVAGGIFLYMLQPKSQKIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
0 1
AT5G26800 unknown protein Potri.005G011800
[exp]
1.41 0.8907
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.011G063300
[exp]
4.47 0.8136
AT1G20823 RING/U-box superfamily protein... Potri.007G064401
[exp]
5.74 0.7720
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Potri.002G149500
[exp]
6.48 0.7900 Pt-DHDPS2.1
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
8.36 0.7776
AT5G64460 Phosphoglycerate mutase family... Potri.001G286000
[exp]
8.48 0.7896
AT1G67620 Lojap-related protein (.1) Potri.008G105700
[exp]
12.96 0.7454
AT3G58680 MBF1B, ATMBF1B multiprotein bridging factor 1... Potri.001G390400
[exp]
14.83 0.7281
Potri.003G046300
[exp]
16.58 0.7451
AT5G63890 HISN8, ATHDH HISTIDINE BIOSYNTHESIS 8, hist... Potri.011G163400
[exp]
18.89 0.7527

Potri.005G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.