Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14170 766 / 0 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G79440 191 / 6e-52 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G24503 189 / 3e-51 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 178 / 2e-47 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 175 / 3e-46 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G74920 172 / 2e-45 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 165 / 4e-43 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT2G24270 139 / 1e-34 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 132 / 5e-32 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT3G66658 108 / 3e-24 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G078700 [exp] 1003 / 0 AT2G14170 753 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 803 / 0 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 796 / 0 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 796 / 0 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.010G174000 [exp] 199 / 1e-54 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.002G189900 [exp] 181 / 4e-48 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.018G075000 [exp] 179 / 5e-48 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.012G075600 [exp] 177 / 2e-47 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 172 / 1e-45 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020459 [exp] 741 / 0 AT2G14170 861 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10007084 [exp] 733 / 0 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10023625 [exp] 184 / 2e-49 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 179 / 9e-48 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 175 / 2e-46 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10012999 [exp] 169 / 3e-44 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10029166 [exp] 167 / 1e-43 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10042149 [exp] 165 / 3e-43 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10001845 [exp] 156 / 4e-40 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10034115 [exp] 156 / 1e-39 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.005G147700.2 pacid=42804993 polypeptide=Potri.005G147700.2.p locus=Potri.005G147700 ID=Potri.005G147700.2.v4.1 annot-version=v4.1 ATGCAAACCCATAATCAAACAGAGTTTGAAGGGCAGTATAAGATGCTCCCTCCAGAATCTGGAGTTTTTCAAGATCGCGAGGAACTAATCAAATATGTTC GTGACTTTGGGGCTAATCAAGGTTATGTTGTGACTATTAAGAAGTCAAGGAGGGACAGAAGAGTTATACTTGGTTGTGACAGAGGAGGCATTTATCGTAA TAGGCGTAAGATTGATGAAAGTCAACGTAAAAGAAAAGCATGTTCGCGCCTTATAAATTGCCCTTTTGAAGCAATTGGTAAGAAGGAAGATGATATGTGG GTGCTTAATATAAAAAATGGGGAACACAATCATGAACCTTTAAAAGACATGTCAGAGCATCCTTACAGTCGACGTTTTTCTGAAGAAGAGGTTAGACAAA TTAGAATGATGACTGAAGCTGGTGTAAAACCACGACAAGTGCTTAAAGCTCTCAAGCAAAGTAACCCAGAGCTACAATCAACACCAAGACATTTGTATAA CCTCAAAGCTAAGATCCGTCAAGGTGGTTTATCAGATAGAAGTTTGAAGTCATGGAGACCTAACAGATCTGTTCTGGTAAACACTAGTGCATCTTCAACC GGAGAGTCATTAAAGGAAGACAGGCAGCCTATGAAGGTCCCTAACTTTATTGGAGGAAAGTTTTTAGTGTCTCAAGGGTGTACAATTATTGATGTTTTAA ATCCTGCTACACAAGAGGTTGTTTCGCACCTACCTTTAACCACCTATGAAGAATTCAAAGATGCAGTTATCACAGCCAAGAGAGCATTTCCTTCTTGGAA AAACACGCCTATTGCCACTCGTCAACGGGTTATGTTCAGATTCCAGGAGCTTATTCGCAGGGACATGGATAAGCTTGCTACCAGTATAACCTCAGAACAG GGTAAGACTCTAAAAGGTGCCTTGGGTGATGTGCTTTGTGGATTGGAGGCAGTTGAGCATGCTTGTGCTATGGCAACATTGCAAATGGGGGAGTTTGTTC CTAATGCATCAAATGGAATTGATACATACTGCATTAGGGAACCACTTGGTGTTTGTGCTGGGATATGCCCTTTTAATTTCCCAGCGATGATTCCTTTGTG GATGTTCCCTATTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGAATCCAGGGGCATCAATGATACTTGCAGCCTTGGCAGTGGAG GCTGGTTTTCCTGACGGTGTCTTAAATGTCATTCATGGAACGAATGATATTGTTAATTACATATGTGATGATGACGATGTAAAGGCTATATCGTTCATTG GTTCAGATCTGGCTGGTTTGCATATATATGCTAGGGCAGCTGCCAGAGGGAAGCGTGTTCAGTCTAATATTGGAGGAAAAAATCATGCTATTATACTGCC TGATGCAAGCATAGATGATACTTTGAATGCTCTGGTTGCTGCTGGCTTTGGTGCTGCAGGACAGCGGTGCATGGCATTGAGCACAGCTGTTTTTGTTGGA GGTTCATCAGCATGGGAGCATGAACTTGTGGAGCATGCCAAAGCACTTAAAGTTAATGCAGGGACTGATCCCAGTGCAGACCTTGGTCCAGTGATTAGCA AAGAGGTAAAGGATCGCATATGTAGACTAGTTCAGAGTGGTGTTGACAGTGGTGCTAGGCTTCTTCTTGATGGGAGAAACATTGTGGTTCCAGGATATGA AAATGGAAGTTTTGTTGGTCCTACAATCTTATGTGATGTTACAATCAGCATGGAATGCTACAAGGAAGAAATTCTTGGGCCAGTCCTGCTCTGTATGCAG GCAGACAGCCTAGAAGAGGCCATAACCATTGTAAACAGAAACAGGTATGGGAATGGAGCTTCCATTTTCACTACATCTGGTGTCGCTGCGAGGAAGTTCC AGAATGACATTGATGCTGTGCTGGTTGGAATCAATGTTTCTGTTCCAGTTCCATTGCCATGCTCCTCATTTCATGAAGCTAAGGTGTCTTTTGCTGGCAA TCTAAATTTTTGCGGAAAGACAGGTGTGCAATTTTATACCCAGATTAAGACAGTTGCGCAACAATGGAGAGAGTTACCTAGCATAGGAGTCTCGCTGTCT ATGCATACATCGAATGAGATGGAAATGACAAGTCGAGGGGTTTGCTCAGCATTGCCTCCATCTGAGAGAGATTCACCTGGCAAGACAGTGTCATCGGCTA TGTCACTGGCGCCAGAGAGAGATCCTCAGAAGCATAGAGAGCTGCTGTGTGAGAATTTACCAAAATCAGGAGGGTCATCAGTGCCCTCAATAACTGACAA GGATTTGCATAACCAGGAGGCATCCCTGGTTTTGCCTCCAACAGCTGAGAAGGATTTACAGGCGAAGATACCTCCCACTATACCTCATGCATCAGAGATC AAGCTATCAAGCCAAGAAATATCATTAACCACATGCCAGACATCTGAAGGAATGTATATACCTGTACCATCTCAGTGGAATGAAACTCCAACCCTAACAT CTCAGAGGACTGAAAGTATCTCTCAAATTTCTCAGAGGATCTACTTACCTACTTCTCAGAGGAGAAACAATGCTGCCCCTTCTTTGAAGAGGATTGATGC TGCAATGGATTTAACTTCTGAGTGTGTATACATGGCAACACCTCGTCAGAATGATAATACGGGTCCAGCATTGCTCAAAGACAGCAGTCCATCTCCAACC TCTCGTCCAACTGACACCGCTGCACATCCTGCTTCGGAGAGGTTACATGATATTACAACTTCTCACTTGAGTGACAGCATGGTCCAGTCATTTCAAAGGA ACGATCACGTGTTTCCAACCGAGAGGAAATACACATCCGCTGCAGCTCACAGGAATGACCATATTGGCTTAACATCACAGAGGCCTGATGTTGCTTCATA TCCAAGTTCCGAAAGGGTTTACAGCTCTGCAACATCTCAAAGGACAGACAATATGATTCCAGCATCCCAGCGAGCTGAAGCTATGCCACCGACCACAAAA ACTATGTATATGCCTCCAATTGTTCAGAGAAATAACGGTCCGCAGAAAACATCAGAGAGGCTATATATGTATCAATCTGAAAGGATGTATTCTGAGAGCA CATTAATTTCAATAGATGGTTTTTCCAGCCAGGGAGTTTCAATGACTTTGGCGACATCTCAGAGGATGTAG
AA sequence Show only first row Show all	>Potri.005G147700.2 pacid=42804993 polypeptide=Potri.005G147700.2.p locus=Potri.005G147700 ID=Potri.005G147700.2.v4.1 annot-version=v4.1 MQTHNQTEFEGQYKMLPPESGVFQDREELIKYVRDFGANQGYVVTIKKSRRDRRVILGCDRGGIYRNRRKIDESQRKRKACSRLINCPFEAIGKKEDDMW VLNIKNGEHNHEPLKDMSEHPYSRRFSEEEVRQIRMMTEAGVKPRQVLKALKQSNPELQSTPRHLYNLKAKIRQGGLSDRSLKSWRPNRSVLVNTSASST GESLKEDRQPMKVPNFIGGKFLVSQGCTIIDVLNPATQEVVSHLPLTTYEEFKDAVITAKRAFPSWKNTPIATRQRVMFRFQELIRRDMDKLATSITSEQ GKTLKGALGDVLCGLEAVEHACAMATLQMGEFVPNASNGIDTYCIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPCEKNPGASMILAALAVE AGFPDGVLNVIHGTNDIVNYICDDDDVKAISFIGSDLAGLHIYARAAARGKRVQSNIGGKNHAIILPDASIDDTLNALVAAGFGAAGQRCMALSTAVFVG GSSAWEHELVEHAKALKVNAGTDPSADLGPVISKEVKDRICRLVQSGVDSGARLLLDGRNIVVPGYENGSFVGPTILCDVTISMECYKEEILGPVLLCMQ ADSLEEAITIVNRNRYGNGASIFTTSGVAARKFQNDIDAVLVGINVSVPVPLPCSSFHEAKVSFAGNLNFCGKTGVQFYTQIKTVAQQWRELPSIGVSLS MHTSNEMEMTSRGVCSALPPSERDSPGKTVSSAMSLAPERDPQKHRELLCENLPKSGGSSVPSITDKDLHNQEASLVLPPTAEKDLQAKIPPTIPHASEI KLSSQEISLTTCQTSEGMYIPVPSQWNETPTLTSQRTESISQISQRIYLPTSQRRNNAAPSLKRIDAAMDLTSECVYMATPRQNDNTGPALLKDSSPSPT SRPTDTAAHPASERLHDITTSHLSDSMVQSFQRNDHVFPTERKYTSAAAHRNDHIGLTSQRPDVASYPSSERVYSSATSQRTDNMIPASQRAEAMPPTTK TMYMPPIVQRNNGPQKTSERLYMYQSERMYSESTLISIDGFSSQGVSMTLATSQRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.005G147700 [exp]	0	1
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.001G152150 [exp]	1.41	0.8780
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	1.41	0.8984
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	3.46	0.8767
					Potri.013G034600 [exp]	8.66	0.8180
AT1G76270			O-fucosyltransferase family pr...		Potri.005G249900 [exp]	9.32	0.8125
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.001G416100 [exp]	12.00	0.8195
AT3G28430			unknown protein		Potri.018G140800 [exp]	12.00	0.8460
AT2G02910			Protein of unknown function (D...		Potri.010G094000 [exp]	12.40	0.8221
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.006G266100 [exp]	12.48	0.7991
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	12.96	0.8509	ATKEA4.2

Compare expression of checked genes

Potri.005G147700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.