Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07670 166 / 1e-41 ATECA4 endomembrane-type CA-ATPase 4 (.1) AT1G07810 164 / 4e-41 ATECA1, ACA3, ECA1 ER-type Ca2+-ATPase 1, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 1, ER-type Ca2+-ATPase 1 (.1) AT2G22950 156 / 1e-38 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G37640 155 / 2e-38 ACA2 calcium ATPase 2 (.1) AT3G42640 154 / 5e-38 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT1G17260 153 / 6e-38 AHA10 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) AT2G07560 153 / 8e-38 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT4G29900 152 / 2e-37 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G60330 150 / 7e-37 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) AT3G21180 149 / 2e-36 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G005900 [exp] 168 / 1e-42 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.001G161400 [exp] 161 / 3e-40 AT1G17260 1441 / 0.0 autoinhibited H\(+\)-ATPase isoform 10, autoinhibited H(+)-ATPase isoform 10 (.1) Potri.005G215600 [exp] 161 / 3e-40 AT3G63380 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G047500 [exp] 156 / 1e-38 AT3G63380 1411 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.006G188600 [exp] 153 / 9e-38 AT3G42640 1602 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G072900 [exp] 152 / 3e-37 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.001G020600 [exp] 151 / 3e-37 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.018G112400 [exp] 150 / 9e-37 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 149 / 2e-36 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042843 [exp] 179 / 1e-45 AT1G07670 1799 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10028139 [exp] 177 / 2e-45 AT1G07670 1798 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10001428 [exp] 155 / 3e-38 AT4G29900 1593 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10001638 [exp] 155 / 3e-38 AT4G29900 1599 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Lus10023328 [exp] 155 / 6e-38 AT1G07670 1549 / 0.0 endomembrane-type CA-ATPase 4 (.1) Lus10004086 [exp] 152 / 1e-37 AT3G63380 1039 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019593 [exp] 152 / 1e-37 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10026946 [exp] 152 / 3e-37 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10018687 [exp] 152 / 3e-37 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10001631 [exp] 149 / 2e-36 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00689 [poplar] [flax] Cation_ATPase_C Cation transporting ATPase, C-terminus PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G147900.2 pacid=42805584 polypeptide=Potri.005G147900.2.p locus=Potri.005G147900 ID=Potri.005G147900.2.v4.1 annot-version=v4.1 ATGGGATTTCCCAAATTCTTCTCTATCTTCTCTGCAAATGCAAACAATCAAAACGGTTCTATTCAAGAAAATCTCATAAAGAATCCTCGTAAATACTTGA CCTTCCCCAGATCTGTCTTTAACTACCTGGGACTGGGACGCCTTGCAGTATCTGGAAGTGCAGATAAATCTGATGGGAGCCAGAGGTCGGAGGAAGAAGA GAAGGTGTATTCTTGGCTATACGCCTTGGCACAATCGGATAAAGATTTGGTTTTTGAGTACGTTCGCTCCACCGAAAGGGGCTTGAGCTTCACTGAAGCT GATAGGAGGCTGAGAGAAAATGGTCCAAATGTTCCTCTTGGATATACTTTTCCAAATTGGTGGCATCTTCTGTGGCATGCCTTCTTCCACCCTTTCAATA TTATTTTGATTATACTGTCTGCCCTCTCCTACGTAGCCAGTGATAGTCCAAATGGATGCATTATGCTCATATTAGTTTTTATAAGTGTATCCCTTCGATT CTATCAGGAATACACGAGTTCAAAAGCTGCCATGAAACTCTCTGAGTTTGTAAGATGCCCTGTTAAAGTTCAAAGATGTGCTGGCAGAGTTATTCAGACA GAGTTGATTGTTCAAGTTGATCAAAGGGATATTGTTCCTGGGGACATTGTTATTTTTGAACCTGGAGACCTTTTTCCTGGTGATGTTAGACTACTATCTT CGAAGCACCTTTCCGTCAGTCAGTCCTCATTGACAGGCGAGTCCTGGATAACTGAAAAAACAGCAGATGCTAAAGAGAATCAGAGAACTCCTTTGCTAGA GTTGAAAAATATTTGCTTCATGGGAACAAATGTTGTATCAGGTAGTGGAATGGGTTTAGTTGTTTCGACAGGATGTAAGACTTACATGAGCACCATGTTT TCAAGTATAGGAAAGAAAAAACCACCAGATGGCTTCAATGATGGCATCCGATGCATATCCTACGTGCTCATCAGCGTAATGCTGGTAGTGATGGCAATCA TAATATTGACTGATTATCTTAAGTCTCGTGATGTGAGTGAGAGTGTTCTTTTCGGACTATCAGTTGCATGTGCACTCACTCCGAATATGCTTCCCCTTAT TGTTAACACGAGTCTTGCAAAAGGAGCACTTGTCATGGCCAGAGACAGATGCATCGTCAAAAGCTTAGCTGTTATACGAGATATGGGATCCATGGATATC CTATGCATCGACAAGACTGGTACACTCACCATGGACCATGCAATCATAGTTAATCATCTTGACAGCTGGGGTTCACCCCAAGAAAAGGTTTTACGCTTTG CCTTCCTGAATTCCTACTTCAAGACTGATCAAAAATATCCTCTAGATGATGCCATTTTGGCATATGTGTTCACAAATGGATACAGATTCCAGCCATCCAA GTGGAGTAAAATAGATGAAATTCCTTTTGATTTTATACGAAGAAGAGTATCAGTTATCTTGGAAACTGAATCAAATGCTTCCCAAGGAAGAAATAGCCAC ACCTGTGATAGATTCATGATAACCAAGGGAGCATTGGAAGAAGTGATGAGAGTTTGTTCTTTTATAGACAATGTTGATGGGAGTGAAATTGTTACCTTCT CTTCAGAAGACTATCAGAGGATTCTGAATATGGGGGAAGAATTAAGCAACCGGGGACTAAGGATAATAGGAGTTGCGATAAAAAGGCTACAAATGCAAGG AAGTCATCCAAACATGGCCAATGAGGAGATCACTGAATCAGACATGGTCTTCCTTGGTGTAATAACGTTCTTTGACCCCCCAAAGGACTCAGCAAAGCAG GCTCTATGGAGGCTAGCTGAGAAGGGAGTAAAAGCGAAGGTATTAACAGGCGACTCGCTATCTCTGGCAGTAAGGATTTGCGAAGAACTTGGCATTAGAA CCACCAATGTGACTACAGGACCGGAACTTGAGCTACTAAATCAGGATGACTTTCATGAGACTGTTAAAAGTGCAACGGTGCTTGCTCGGCTAACCCCTAC TCAGAAACTCAGGGTGGTGCAATCCTTGCAGACTGCTGGTGAACATGTCGTTGGATTCCTAGGGGATGGAGTTAATGACTCGCTCGCAATAGATGCTGCC AACGTAGGTATATCAGTTGACTCAGGTGCTTCGGTTGCAAAAGACTTGGCAGACATCATTTTACTTGAGAAAGATCTGAATGTACTTGTCGCTGGGGTAG AGAACGGTCGCCTCACTTACGGCAACACCATGAAGTACATTAAAATGTCTGTTGTCGCCAACATAGGAAGTGTTCTCTCACTCCTGATAGCAACCCTGTT GCTGGAATTTGAGCCATTGACTCCGAGGCAGCTCCTTACACAAACTTTCCTTTACAGTGTGGGTCAAATCGCAATCCCATGGGACAAGATGGAAGAAGAT TATGTAAAGACCCCCCAGAAATGGTCTGAGAAAAGTTTGCCCATCTTCATATTATGGAATGGCCCTGTGTGCACCCTCTGTGATCTGGCGAACCTTATCT TTTTGTGGTTCTATTACAGAGATTACAACATATTCGATGTCAAATTCTTCCATTCTGCTTGGTTTATTGAAGGCCTTCTAATGCAGACCCTAATTTTCCA CTTAATCCGAACGGAGAAAATCCCCTTCATTCAGGAGATATCCTCGTGGCCTGTAATCTGTTCAACGGTGGTGATCTCTGCCATTGGGATAGCAATTCCT TTCACACAAGTAGGAGAAGTCATGGGATTCACTAATTTGCCATTCTCATATTTTGGATTTTTGGTTGTGCTTTTTCTAGGGTATTTTACAGTTGGTCAAG TGGTCAAGAGAATGTATATTTTGATATACAGAAAATGGCTGTAG
AA sequence Show only first row Show all	>Potri.005G147900.2 pacid=42805584 polypeptide=Potri.005G147900.2.p locus=Potri.005G147900 ID=Potri.005G147900.2.v4.1 annot-version=v4.1 MGFPKFFSIFSANANNQNGSIQENLIKNPRKYLTFPRSVFNYLGLGRLAVSGSADKSDGSQRSEEEEKVYSWLYALAQSDKDLVFEYVRSTERGLSFTEA DRRLRENGPNVPLGYTFPNWWHLLWHAFFHPFNIILIILSALSYVASDSPNGCIMLILVFISVSLRFYQEYTSSKAAMKLSEFVRCPVKVQRCAGRVIQT ELIVQVDQRDIVPGDIVIFEPGDLFPGDVRLLSSKHLSVSQSSLTGESWITEKTADAKENQRTPLLELKNICFMGTNVVSGSGMGLVVSTGCKTYMSTMF SSIGKKKPPDGFNDGIRCISYVLISVMLVVMAIIILTDYLKSRDVSESVLFGLSVACALTPNMLPLIVNTSLAKGALVMARDRCIVKSLAVIRDMGSMDI LCIDKTGTLTMDHAIIVNHLDSWGSPQEKVLRFAFLNSYFKTDQKYPLDDAILAYVFTNGYRFQPSKWSKIDEIPFDFIRRRVSVILETESNASQGRNSH TCDRFMITKGALEEVMRVCSFIDNVDGSEIVTFSSEDYQRILNMGEELSNRGLRIIGVAIKRLQMQGSHPNMANEEITESDMVFLGVITFFDPPKDSAKQ ALWRLAEKGVKAKVLTGDSLSLAVRICEELGIRTTNVTTGPELELLNQDDFHETVKSATVLARLTPTQKLRVVQSLQTAGEHVVGFLGDGVNDSLAIDAA NVGISVDSGASVAKDLADIILLEKDLNVLVAGVENGRLTYGNTMKYIKMSVVANIGSVLSLLIATLLLEFEPLTPRQLLTQTFLYSVGQIAIPWDKMEED YVKTPQKWSEKSLPIFILWNGPVCTLCDLANLIFLWFYYRDYNIFDVKFFHSAWFIEGLLMQTLIFHLIRTEKIPFIQEISSWPVICSTVVISAIGIAIP FTQVGEVMGFTNLPFSYFGFLVVLFLGYFTVGQVVKRMYILIYRKWL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.005G147900 [exp]	0	1
AT4G16447			unknown protein		Potri.016G009200 [exp]	1.41	0.9038
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.008G062400 [exp]	3.87	0.8928
AT1G60010			unknown protein		Potri.008G146500 [exp]	4.47	0.8845
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	5.00	0.8516	Pt-TCP1.1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G013140 [exp]	9.16	0.8988
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	11.22	0.8755
AT1G64430			Pentatricopeptide repeat (PPR)...		Potri.003G140800 [exp]	14.42	0.8912
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.016G031100 [exp]	19.18	0.8100
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	20.39	0.8749	Pt-GLU1.2
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.002G023200 [exp]	23.13	0.8046

Compare expression of checked genes

Potri.005G147900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.