Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43130 319 / 1e-110 LCV2 like COV 2 (.1) AT2G20120 286 / 3e-97 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 283 / 2e-96 LCV1 like COV 1 (.1) AT2G18460 268 / 2e-90 LCV3 like COV 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065800 [exp] 342 / 1e-119 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.006G158100 [exp] 296 / 2e-101 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 296 / 2e-101 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 268 / 2e-90 AT2G18460 365 / 2e-128 like COV 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028564 [exp] 336 / 4e-117 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 335 / 5e-117 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10028563 [exp] 332 / 1e-115 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10018868 [exp] 309 / 7e-106 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10011099 [exp] 288 / 4e-98 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10014314 [exp] 266 / 2e-88 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10026023 [exp] 264 / 1e-87 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10043220 [exp] 246 / 6e-83 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [poplar] [flax] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Potri.005G148000.1 pacid=42802552 polypeptide=Potri.005G148000.1.p locus=Potri.005G148000 ID=Potri.005G148000.1.v4.1 annot-version=v4.1 ATGGCGGAAGAGAAGGAGTCAACGTCGATTCCACTGAGCCATCCGGACGACAATGGCGGCGAAGATCCACCCAAATCGCCTCCTCATTCTAAGTCCTCAT CTAATTCCTCCACTCGCGAGGCCTGCTGTTTTGTCCTACAAAGCTGGGTCTCCAAGAAGTTCATTACTGGATGTGTAGTACTTTTCCCCATAGCTGTGAC ATTCTTTATTACATGGTGGCTTATGCAATTTGTTGATGGTTTCTTTAGTCCACTATATGCACGCCTTGGCGTTGACATATTTGGACTTGGATTTGTCACA TCTCTGGTGTTTGTGTTCTTTGTTGGTGTTTTTGTTTCATCATGGATAGGTTCCACCATCTTCTGGCTTGGGGAATGGTTTATAAAGCGAATGCCCTTTG TGAAGCATTTATATTCAGCCTCCAAACAAATTAGTGCTGCAATTTCTCCAGATCAGAATACCACAGCTTTTAAAGAGGTGGCAATTATTCATCATCCTCG TGTAGGTGAATATGCTTTTGGTTTCATCACATCAACAGTAATCCTTCAGAGAGATAATGAAGATGAAGAGTTGTGTAGTGTTTTTGTTCCGACAAACCAT CTATATATTGGTGATATATTCCTGGTGAATTCCAAGGACATTATAAGACCAAATCTGTCAATTCGAGAAGGAATAGAGATCATTGTTTCTGGAGGTATGA CAATGCCACAGATGATCTCCCCGGTGGAACGGGTTGTTCACCAAAATGAAGGAATCCCTTTGAACAGGATGGTGTAA
AA sequence Show only first row Show all	>Potri.005G148000.1 pacid=42802552 polypeptide=Potri.005G148000.1.p locus=Potri.005G148000 ID=Potri.005G148000.1.v4.1 annot-version=v4.1 MAEEKESTSIPLSHPDDNGGEDPPKSPPHSKSSSNSSTREACCFVLQSWVSKKFITGCVVLFPIAVTFFITWWLMQFVDGFFSPLYARLGVDIFGLGFVT SLVFVFFVGVFVSSWIGSTIFWLGEWFIKRMPFVKHLYSASKQISAAISPDQNTTAFKEVAIIHHPRVGEYAFGFITSTVILQRDNEDEELCSVFVPTNH LYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQMISPVERVVHQNEGIPLNRMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43130		LCV2	like COV 2 (.1)		Potri.005G148000 [exp]	0	1
AT5G53310			myosin heavy chain-related (.1...		Potri.012G033100 [exp]	1.41	0.8677
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	1.73	0.8582
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.016G110600 [exp]	4.79	0.8245	Pt-DET2.1
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.010G236700 [exp]	8.94	0.8564
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	10.58	0.8487
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.015G079900 [exp]	12.24	0.8026
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	12.72	0.8624
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	16.12	0.8398
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	18.97	0.8399	ALDH1.2
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Potri.004G043900 [exp]	19.10	0.8542	NSF.1

Compare expression of checked genes

Potri.005G148000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.