Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49660 503 / 0 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 401 / 9e-141 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 159 / 2e-46 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 143 / 4e-40 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 138 / 8e-37 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G52820 134 / 2e-35 WD-40 repeat family protein / notchless protein, putative (.1) AT5G08560 129 / 2e-33 transducin family protein / WD-40 repeat family protein (.1.2) AT5G25150 127 / 1e-32 TAF5 TBP-associated factor 5 (.1) AT1G73720 122 / 3e-31 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G18130 117 / 3e-30 RACK1C_AT receptor for activated C kinase 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G009500 [exp] 554 / 0 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 416 / 4e-147 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 161 / 3e-47 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 146 / 3e-41 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 147 / 9e-40 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 133 / 2e-35 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 134 / 5e-35 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G206600 [exp] 126 / 3e-32 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G263400 [exp] 126 / 3e-32 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039636 [exp] 546 / 0 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 537 / 0 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 397 / 2e-139 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 397 / 3e-139 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 161 / 3e-47 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 161 / 3e-47 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 155 / 6e-43 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 155 / 7e-43 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10012230 [exp] 143 / 6e-40 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 143 / 9e-40 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.005G148500.1 pacid=42803595 polypeptide=Potri.005G148500.1.p locus=Potri.005G148500 ID=Potri.005G148500.1.v4.1 annot-version=v4.1 ATGTCAGCCCCAACCGAATCCTACAAACCTTACACCCTAACCCAAACCCTAACAGGCCACAAATCCCCCATATCATCCGTCAAATTCTCCGCCGATGGCC GTCTCCTCGGCTCTTCCTCCGCTGACAAAACCCTCAGAACCTATTCCATCTCCCTTTCTAATCCTCCTACATCTCCAATCACTCATCTCCATGACTTCCA CGGGCACGAACAAGGCGTCTCCGACCTCGCCTTCTCCTCTGATTCCCGCTTCATTGTCTCTGCATCCGACGATAAAACCCTCCGCCTATGGGACGTCACA ACAGGGCACACAATCAAAACCCTTCATGGGCACACCAATTATGTGTTTTGCGTCAATTTTAACCCGCAATCGAATATGATTGTTTCGGGTTCTTTTGATG AGACTGTTAGAATTTGGGATGTGAAGAGTGGCAAGTGTTTGAAGGTATTGCCTGCCCATTCGGATCCAGTCACAGCTGTCGATTTTAATAGAGAGGGTTC GCTTATTGTATCGAGTAGTTATGATGGATTGTGTAGAATTTGGGACGCTGGGACTGGTCATTGTATCAAGACCTTGATTGATGATGAAAACCCACCTGTT TCCTTCGTCAAGTTTTCGCCTAATGGAAAGTTCATTCTTGTTGGCACCTTGGATAACAATTTGAGGCTTTGGAATTTTTCAACTGGGAAATTTCTGAAGA CATACACTGGGCATGTCAATACAAAATTCTGTATTTCGCCCACCTTTTCCGTAACAAATGGAAAGTACATTGTTGGTGGTTCGGAGGATAGTTGTGTATA CCTGTGGGAGCTTCAAAGCAGGAAAATAGTGCAGAAATTGGAAGGTCACACAGATACAGTTATATCAGTAGCATGTCATCCCACCCAAAATATTATTGCA TCTGGTGCACTGGGCAATGACAAGACCGTGAAGATTTGGACTCAGGAAATATGA
AA sequence Show only first row Show all	>Potri.005G148500.1 pacid=42803595 polypeptide=Potri.005G148500.1.p locus=Potri.005G148500 ID=Potri.005G148500.1.v4.1 annot-version=v4.1 MSAPTESYKPYTLTQTLTGHKSPISSVKFSADGRLLGSSSADKTLRTYSISLSNPPTSPITHLHDFHGHEQGVSDLAFSSDSRFIVSASDDKTLRLWDVT TGHTIKTLHGHTNYVFCVNFNPQSNMIVSGSFDETVRIWDVKSGKCLKVLPAHSDPVTAVDFNREGSLIVSSSYDGLCRIWDAGTGHCIKTLIDDENPPV SFVKFSPNGKFILVGTLDNNLRLWNFSTGKFLKTYTGHVNTKFCISPTFSVTNGKYIVGGSEDSCVYLWELQSRKIVQKLEGHTDTVISVACHPTQNIIA SGALGNDKTVKIWTQEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.005G148500 [exp]	0	1
AT2G27800			Tetratricopeptide repeat (TPR)...		Potri.018G093700 [exp]	1.00	0.8907
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	4.47	0.8528
AT4G30230			unknown protein		Potri.006G168400 [exp]	5.09	0.7892
AT1G48200			unknown protein		Potri.002G084400 [exp]	6.00	0.7838
AT5G63480			unknown protein		Potri.012G099200 [exp]	6.00	0.8326
AT4G31200			SWAP (Suppressor-of-White-APri...		Potri.018G002000 [exp]	8.83	0.8143
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Potri.005G198400 [exp]	10.00	0.8158
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Potri.015G090500 [exp]	10.24	0.8108	HAG905
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.018G029300 [exp]	17.66	0.7762
AT4G08960			phosphotyrosyl phosphatase act...		Potri.005G162900 [exp]	17.74	0.7209

Compare expression of checked genes

Potri.005G148500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.