Plant FIBer expression Database

Potri.005G148700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22720 177 / 2e-49 SPT2 chromatin protein (.1.2.3)
AT4G37860 134 / 2e-35 SPT2 chromatin protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G009700
[exp]
570 / 0 AT2G22720 166 / 2e-45 SPT2 chromatin protein (.1.2.3)
Potri.001G257300
[exp]
107 / 1e-25 AT4G37860 108 / 1e-26 SPT2 chromatin protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019243
[exp]
248 / 1e-76 AT2G22720 140 / 1e-35 SPT2 chromatin protein (.1.2.3)
Lus10011581
[exp]
236 / 4e-72 AT2G22720 139 / 3e-35 SPT2 chromatin protein (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.005G148700.2 pacid=42804313 polypeptide=Potri.005G148700.2.p locus=Potri.005G148700 ID=Potri.005G148700.2.v4.1 annot-version=v4.1
ATGCGAGGATATGATAGAGAGGAAGATGAGTATTATGATGAATATGAGGAGGAAGGTGAAGAGCAAGTTGAGGAGGAGGAATATGAAGAACGAAAACCCA
CTGCAGAGGAAATGGAATATCTTGAATTAAGGGAGCGGATTAAAGAACAAATTAGAAAGAAAATGCAGAAGGAACATGGTTCTGTTCTTTCTAAATCCCA
GGAGAAGAAGGAAAAACTTCCATCAGATAATTATGGCTCATTCTTTGGCCCTTCTCAGCCAGTTATTGCTCAAAGAGTAATTCAAGAAAGCAAGTCATTA
CTAGAAAACCAACATTTGGCTCTCAGAGTTTCAAACTCCCAGCATGCTAACAAAAGGAGCTCCTCTTCAACTGCCACAGGTTCCAAAAATGGAGGACATA
GACATGTACCAAAACTAAAAAATGAGCTAAAAACAAAAGTCCAAAAACTCAAGGATACAAGAGATTATTCCTTCTTGTTAACAGATGATGCTGAGCTCCC
AGCTCCTACAAAAGAACCTGCCTATCAAAGTTTCTCTGCTCTGAATTCCGAGGCGGGATCTGCTCAAGTGCAACAAAAGAGCAAACAACCATCTAGCAAT
AGTGGCAGAAATATTCATGGCAGTCATGAAGAAAGGAAGCCAGTTTTCAGGAATGGCCAAATGCATTCTAAAGTAGGATTGCAAAAGCCAACTTCTGCTA
ATAAACCTGATGCAACATTGATGAACTCAAAAAGGCAGCTAGGTAGCAACAACGGGACTGGGCCTGGCCGGCCTGCAGGGTCAAAATGCTTGCCTTCAAA
GACACCTGTTTCCATTATGCAGAAGAAGGCCATGGCACCAAGTGCTAAGAAAATCCTGCCTGCTGTACAGAAACCTCTCCCTTCAAAACCATCTGTTCCA
AAGCAACAATGGGAACAGAGAAAAGGATCACAAGAACCCAACAAGGCTAAAATGATACCAAAACAGCCACTGGCATCTCCAAAACCTCAGATAAATAAGC
CAGTCAAGCAAGTTTCATCTCATGTATTGCCACCGGATAATTGCCTGAAGAAAAAGCCTGTCAGACCATTCCCTGATGAGTGCTCCGATGATGACGTGGA
TGCTTTCGAAATGCTCAGAAAAATGATTGGAAATAAACATCATGGTAATTATGACGACGACGACGACGACGATGATAGCAACATGGAGGCAAATTTTGAT
GATATCGTGAGGGAAGAGAAGAGAAGTGCCAGAATCGCACGAGAGGAAGATGAGGAGCAGCTCCGCTTGATAGAAGAAGAAGAGCGACAAGAACGGAAGA
GAAAGCTGGCGAAGAAGCGCAAACTGAGCCACCGATGA
AA sequence
>Potri.005G148700.2 pacid=42804313 polypeptide=Potri.005G148700.2.p locus=Potri.005G148700 ID=Potri.005G148700.2.v4.1 annot-version=v4.1
MRGYDREEDEYYDEYEEEGEEQVEEEEYEERKPTAEEMEYLELRERIKEQIRKKMQKEHGSVLSKSQEKKEKLPSDNYGSFFGPSQPVIAQRVIQESKSL
LENQHLALRVSNSQHANKRSSSSTATGSKNGGHRHVPKLKNELKTKVQKLKDTRDYSFLLTDDAELPAPTKEPAYQSFSALNSEAGSAQVQQKSKQPSSN
SGRNIHGSHEERKPVFRNGQMHSKVGLQKPTSANKPDATLMNSKRQLGSNNGTGPGRPAGSKCLPSKTPVSIMQKKAMAPSAKKILPAVQKPLPSKPSVP
KQQWEQRKGSQEPNKAKMIPKQPLASPKPQINKPVKQVSSHVLPPDNCLKKKPVRPFPDECSDDDVDAFEMLRKMIGNKHHGNYDDDDDDDDSNMEANFD
DIVREEKRSARIAREEDEEQLRLIEEEERQERKRKLAKKRKLSHR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22720 SPT2 chromatin protein (.1.2.3... Potri.005G148700
[exp]
0 1
AT5G05660 EBI, ATNFXL2 NFX1-like 2, EARLY BIRD, Arabi... Potri.008G068500
[exp]
1.00 0.8608
AT4G39370 UBP27 ubiquitin-specific protease 27... Potri.007G077100
[exp]
6.32 0.7945 Pt-UBP27.1
AT5G49555 FAD/NAD(P)-binding oxidoreduct... Potri.007G025300
[exp]
6.92 0.7671
AT1G70650 Ran BP2/NZF zinc finger-like s... Potri.010G107400
[exp]
9.16 0.7981
AT5G37020 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) Potri.017G141000
[exp]
10.19 0.8096
AT1G23380 HD KNAT6S, KNAT6L,... KNOTTED1-like homeobox gene 6 ... Potri.012G087100
[exp]
11.87 0.7367
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063500
[exp]
12.40 0.7873
AT3G50670 U1SNRNP, U1-70K U1 small nuclear ribonucleopro... Potri.007G026900
[exp]
12.40 0.7602
AT1G12700 RPF1 RNA processing factor 1, ATP b... Potri.006G271400
[exp]
14.69 0.7932
AT1G67580 CDKG;2 Protein kinase superfamily pro... Potri.015G092100
[exp]
14.96 0.7556

Potri.005G148700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.