Plant FIBer expression Database

Potri.005G148800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49880 650 / 0 glycosyl hydrolase family protein 43 (.1)
AT5G67540 629 / 0 Arabinanase/levansucrase/invertase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011543
[exp]
683 / 0 AT5G67540 669 / 0.0 Arabinanase/levansucrase/invertase (.1.2)
Lus10019280
[exp]
605 / 0 AT5G67540 603 / 0.0 Arabinanase/levansucrase/invertase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0143 B_Fructosidase PF04616 Glyco_hydro_43 Glycosyl hydrolases family 43
Representative CDS sequence
>Potri.005G148800.1 pacid=42804294 polypeptide=Potri.005G148800.1.p locus=Potri.005G148800 ID=Potri.005G148800.1.v4.1 annot-version=v4.1
ATGGAGTTAAAAAGAGGAGAGAAAATGACAATGAGGAACAAATACAGGAAACCAACCACTTTCCATTGCAATGCAGGGAGCAGATGTTCGCCATCTGTTG
TTGTATGGAGCTTGGTGGGATTTCTGCTGTCCCTTCACTTGTACTCCCTTGTTAGCCATAATGGTGGAAAAGTTGGAGATGTCCAATTTCATACCAGTCA
TCACACTCTTTTCCGTGAACTTGAAGAGGTGGAAGAGGAGAATATCCAAATACCTCCACCGAAAGGAAAAAGGTCCCCACGTGCTGCAAAGCGAAGGCCT
AAGAGGCCGACCACACTGATTGATGAATTTCTTGATGAGAATTCCCAACTTAGGCATGTGTTCTTTCCTGATATGAAAACTGCTATAGATCCAATGAATG
ATTCTGGGAATGACAGTTTCAACTATTATCCTGGAAGAATTTGGTTGGATACTGAGGGAAATCCAATTCAAGCTCATGGAGGGGGAATTCTATATGATGA
AAGCTCAAGGACTTATTATTGGTACGGAGAATATAAAGATGGACCAACCTACCATGCTCACAAAAAAGGAGCAGCTCGGGTGGATATCATAGGAGTTGGT
TGCTATTCCTCCAAGGACCTCTGGGCATGGAAAAATGAGGGCATCGTACTGGAAGCAGAAGAGGCAAATGAAACCTGTGACCTCCATAAATCTAATGTGC
TTGAGAGGCCAAAAGTGATTTACAATGAGAAGACAGGAAAGTATGTAATGTGGATGCATATTGATGATGCCAACTACACCAAAGCTGCTGTTGGCATTGC
CATTAGCGATTATCCAACCGGTCCATTCAACTACCTCCACAGCAAACAGCCCCATGGATTTGACAGCAGGGATATGACAATCTTCAAGGATGATGATGGT
GTAGCATATATCATATATTCCTCTGAGGACAATAGCGAGCTTCACATTGGACCACTTACAGAAGATTATCTTGATGTTACACATGTTGTGCGAAGAATTT
TAATTGGGCAGCACAGGGAAGCCCCGGCTCTATTCAAGTATCAGGGGACTTATTACATGATCACTTCTGGTTGCACTGGCTGGGCGCCAAATGAGGCCCT
AGCCCATGCAGCAGAGTCAATCATGGGACCATGGGAAACTATGGGAAACCCATGCGTTGGAGGGAACAAAATGTTTCGACAGACTACATTTTTTGCACAA
GGTACATATGTATTTCCTTTGACAGGTCTTCCAGGTTCATTTGTTTTTATAGCAGATCGTTGGAACCCAGCAGACTTGAGGGACTCGAGGTATGTGTGGT
TACCTTTGATAGTTGGAGGGCCTGCGGATCGACCACTGGATTATGATTTCGGATTCCCAGTCTGGTCAAGGGTATCGATTTACTGGCATAGAAAGTGGAG
ACTTCCTTCGGGGAGGAGAGGGCTGAAATGA
AA sequence
>Potri.005G148800.1 pacid=42804294 polypeptide=Potri.005G148800.1.p locus=Potri.005G148800 ID=Potri.005G148800.1.v4.1 annot-version=v4.1
MELKRGEKMTMRNKYRKPTTFHCNAGSRCSPSVVVWSLVGFLLSLHLYSLVSHNGGKVGDVQFHTSHHTLFRELEEVEEENIQIPPPKGKRSPRAAKRRP
KRPTTLIDEFLDENSQLRHVFFPDMKTAIDPMNDSGNDSFNYYPGRIWLDTEGNPIQAHGGGILYDESSRTYYWYGEYKDGPTYHAHKKGAARVDIIGVG
CYSSKDLWAWKNEGIVLEAEEANETCDLHKSNVLERPKVIYNEKTGKYVMWMHIDDANYTKAAVGIAISDYPTGPFNYLHSKQPHGFDSRDMTIFKDDDG
VAYIIYSSEDNSELHIGPLTEDYLDVTHVVRRILIGQHREAPALFKYQGTYYMITSGCTGWAPNEALAHAAESIMGPWETMGNPCVGGNKMFRQTTFFAQ
GTYVFPLTGLPGSFVFIADRWNPADLRDSRYVWLPLIVGGPADRPLDYDFGFPVWSRVSIYWHRKWRLPSGRRGLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G49880 glycosyl hydrolase family prot... Potri.005G148800
[exp]
0 1
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Potri.001G406300
[exp]
3.74 0.7507
AT1G13900 Purple acid phosphatases super... Potri.010G160500
[exp]
7.74 0.8088
AT3G19950 RING/U-box superfamily protein... Potri.005G090500
[exp]
17.05 0.6514
AT2G17800 ARAC1, ATGP2, A... RHO-RELATED GTPASES FROM PLANT... Potri.007G061500
[exp]
17.08 0.7549 RHO1.1
AT2G26920 Ubiquitin-associated/translati... Potri.001G033600
[exp]
19.74 0.7128
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.012G109200
[exp]
20.09 0.7751
AT5G35080 unknown protein Potri.006G061600
[exp]
21.63 0.6973
AT5G12850 C3HZnF PEI1 CCCH-type zinc finger protein ... Potri.001G258400
[exp]
25.33 0.7511
AT2G01270 ATQSOX2 quiescin-sulfhydryl oxidase 2 ... Potri.010G115700
[exp]
27.22 0.6760
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.019G008400
[exp]
34.20 0.7429

Potri.005G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.