Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67530 806 / 0 ATPUB49 plant U-box 49 (.1) AT1G01940 143 / 8e-40 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 121 / 5e-32 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 126 / 2e-30 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT4G33060 103 / 3e-23 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G56070 94 / 6e-22 ROC2 rotamase cyclophilin 2 (.1.2) AT3G63400 97 / 2e-21 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G13120 95 / 2e-21 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G15790 93 / 2e-20 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G34870 83 / 2e-18 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149700 [exp] 144 / 6e-40 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 142 / 2e-39 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 122 / 2e-32 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 125 / 4e-30 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.018G061700 [exp] 103 / 2e-23 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G106200 [exp] 99 / 3e-22 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 91 / 6e-21 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.004G144300 [exp] 94 / 1e-20 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 93 / 3e-20 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004731 [exp] 824 / 0 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10007794 [exp] 781 / 0 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 145 / 3e-40 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 125 / 5e-30 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 125 / 5e-30 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 115 / 3e-29 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 113 / 4e-29 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024999 [exp] 102 / 1e-22 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024831 [exp] 102 / 2e-22 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 102 / 2e-22 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.005G148900.1 pacid=42804644 polypeptide=Potri.005G148900.1.p locus=Potri.005G148900 ID=Potri.005G148900.1.v4.1 annot-version=v4.1 ATGGGGAAGAAACAGCACAGCAAAGATCGAATGTACATAACAAAAACAGAATGGGCCACGGAATGGGGCGGTGCCAAATCCAAACAACTCCAAACTCCTT TCAAACGTCTTCCTTTCTATTGCTGCGCCCTTACATTTACGCCGTTTGAGTTTCCAGTTTGCACAGCAGATGGCAGTGTATTTGATTTAATGCACATAAC TCCGTACATAAGGAAGTATGGGAAGCATCCTGTTACCGGAGCTCCGTTAAAGCAGGGTGATCTTATACCACTCAATTTCCATAAGAATTCTGAAGGAGAG TATCATTGCCCTGTGCTGAACAAAGTTTTTACAGAATTCACACATATAGTTTCTGTGAAGACTACAGGAAATGTGTTCTGCTATGAGGCAATTAAAGAAT TAAACATCAAGACAAAAAACTGGAAAGAACTACTGACAGATGAACTGTTCACAAAGGATGACCTCATAACAATTCAGAATCCAAATGCCATTGATAGTAG GAGTACTCTTGATTTTGATCATGTTAAGAATGCTCTGGAAATTGATGATGAAGAGCTAAAGAAGATGAGTTCGGATCCATCTTATAATATAAACATATCT GGAGATATCAAGCAAATGTTGGCAGAGCTTGGAACCGAGAAAGGAAGGCAAATTGCTCTTCATGGAGGTGGAGGCAGCAAGGCACAAAATGAAAGGGCTG CTGCCCTTGTTGCCATTTTGGCTGCCAGGTCACGCATTAAAGAGGATCCCCAATCAACTTCAAACAAACTTCCAAGAGCTTATAGTATTGTAGATGCTGC ATCTGCTTCAGTTCATGGAAGAAGTGCAGCAGCAGCTAAAGCTGCACCAGATGACAAAACTGCTGCTCGGATAGCTATGCACATGGCTGGTGAGAGGGCG CCTGTGAATTCAACAATGGTAAAGAGCCGTTTTACAACTGGTGCTGCTTCACGATCCTTCACTTCAACCTCTTTTGATCCTGTCACAAAAAATGAGTTTG AATATGTCAAAGTTGAAAAAAATCCAAAGAAGAAAGGTTATGTTCAGCTGCAGACAACACATGGAGATCTAAACATTGAGCTTCACTGTGATATAACTCC AAGGACTTGTGAGAACTTCATCACTCATTGTGAGCGAGGTTATTATACTGGAGTGGCTTTTCATAGAAGCATTCGGAATTTTATGATTCAAGGTGGTGAT CCTACTGGCACTGGGAGAGGAGGCGAATCTATATGGGGGAAGCCTTTCAACGATGAGCCAAACTCCAAGTTGCTCCACTCTGGAAGGGGTGTTGTCAGCA TGGCTAATAGTGGTCCCCACACCAATGGTTCTCAGTTTTTCATCCTCTACAAGTCTGCCAATCATTTGAACTTTAAACATACAGTTTTTGGTGGAGTTGT TGGTGGCATGACTACATTGGCGGCAATGGAAAAAGTTCCTGTTGATGACAATGACCGACCTCTGGAGGAGATAAAGATAACTAGTGTAACGGTATTTGTC AATCCTTACACAGAACTTGATGAAGAAGAGCAAGAGAAGGCTAAAGATGAGAAGGATATCGGGGACGAAGAGAATGAAAAGATTGGGTCATGGTATAGCA ATCCAGGCACAGGAACTACAGAAAGTGGAACTGTGGGTGGTGGTGGTGGTGTTGGAAAGTACTTGAAAGCAAAAAATGCTAAAACTGAATCCACTGCAAT CGACAGTGGTTCATCAACAATTGCTGTGACGAAGAAAAGGAAAGTGGGAGTTTCGACAGCGGAGTTCAAGGACTTCTCTGGCTGGTGA
AA sequence Show only first row Show all	>Potri.005G148900.1 pacid=42804644 polypeptide=Potri.005G148900.1.p locus=Potri.005G148900 ID=Potri.005G148900.1.v4.1 annot-version=v4.1 MGKKQHSKDRMYITKTEWATEWGGAKSKQLQTPFKRLPFYCCALTFTPFEFPVCTADGSVFDLMHITPYIRKYGKHPVTGAPLKQGDLIPLNFHKNSEGE YHCPVLNKVFTEFTHIVSVKTTGNVFCYEAIKELNIKTKNWKELLTDELFTKDDLITIQNPNAIDSRSTLDFDHVKNALEIDDEELKKMSSDPSYNINIS GDIKQMLAELGTEKGRQIALHGGGGSKAQNERAAALVAILAARSRIKEDPQSTSNKLPRAYSIVDAASASVHGRSAAAAKAAPDDKTAARIAMHMAGERA PVNSTMVKSRFTTGAASRSFTSTSFDPVTKNEFEYVKVEKNPKKKGYVQLQTTHGDLNIELHCDITPRTCENFITHCERGYYTGVAFHRSIRNFMIQGGD PTGTGRGGESIWGKPFNDEPNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGMTTLAAMEKVPVDDNDRPLEEIKITSVTVFV NPYTELDEEEQEKAKDEKDIGDEENEKIGSWYSNPGTGTTESGTVGGGGGVGKYLKAKNAKTESTAIDSGSSTIAVTKKRKVGVSTAEFKDFSGW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G67530		ATPUB49	plant U-box 49 (.1)		Potri.005G148900 [exp]	0	1
AT5G66100			winged-helix DNA-binding trans...		Potri.005G243600 [exp]	1.00	0.8036
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	2.00	0.7877
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	3.16	0.7781
AT5G19950			Domain of unknown function (DU...		Potri.018G073100 [exp]	4.24	0.7603
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Potri.002G213500 [exp]	7.48	0.7847
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	10.24	0.7293
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005000 [exp]	17.86	0.7479	GTC901
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	22.44	0.7628
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	22.44	0.7311
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	24.85	0.7750

Compare expression of checked genes

Potri.005G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.