Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65590 196 / 2e-60 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 120 / 1e-32 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT2G37590 123 / 2e-32 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G60200 121 / 2e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT2G28810 119 / 6e-31 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G02460 119 / 2e-30 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT1G07640 117 / 2e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G55370 117 / 2e-30 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT2G28510 115 / 6e-30 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT3G21270 113 / 6e-30 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058200 [exp] 481 / 9e-172 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 124 / 7e-33 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.007G038100 [exp] 123 / 2e-32 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.008G055100 [exp] 122 / 5e-32 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.010G205400 [exp] 122 / 7e-32 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.011G055600 [exp] 122 / 1e-31 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.004G046600 [exp] 121 / 1e-31 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.015G048300 [exp] 120 / 3e-31 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.001G238400 [exp] 119 / 4e-31 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025707 [exp] 201 / 6e-62 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10035955 [exp] 172 / 2e-50 AT5G65590 196 / 4e-60 Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 120 / 4e-31 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 120 / 2e-30 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10025340 [exp] 118 / 8e-30 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10015425 [exp] 115 / 9e-30 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10002381 [exp] 116 / 1e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10029458 [exp] 116 / 1e-29 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 115 / 1e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 115 / 1e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G149100.1 pacid=42804854 polypeptide=Potri.005G149100.1.p locus=Potri.005G149100 ID=Potri.005G149100.1.v4.1 annot-version=v4.1 ATGATGGCCCCAGATAATCTTCAGGCAAAACAGGCCCCCATAGACGACAACCAAATCACTACTAGTAACCGAAAAACAACAACGACAAGACCACAAGAGG AAGCTTTGAAGTGTCCAAGATGTGACTCGCCCAATACAAAATTCTGCTACTATAACAATTACAGTTTAACACAGCCTAGGCATTTTTGCAAGACATGTAG AAGGTACTGGACCAAAGGAGGAGCCTTGCGCAACGTTCCCTTCGGCGGTGGCTGTAGAAAAAACAAGAAGATAAAGTCGTCTTCAGGGCTCTCAAGTGAC TCCAGTGGCTCCTCAGAGATCGGTGGATTCAACTTCTTTCATGGACTCTCCCCGGCCATGAAATTTAATCTCGGTGGGCTATCATTTCCTCGGCTAAACC TTTCACCAAATGGCATATATAACCATTTCCCTTCATTTGGGGATATTTCAGCAACTTCTGAAGCTGCAGCTACTGTTACTAGTCCTCGTTTCAGACTTGA TCCATCTGTTAGTTCCACTGCTGGTTCTGGTTCCTTAATGGGGTTTAGTTATCCGCTTACTTCGGTTAGTAGTGGGTTTTGTGGAGCAACTCAAGAGAAT ACCGGTGGCGCATCAGTGAATGTCAACACTAATCTCGCGTCTTCAATTGAATCTCTGAGTTGTATAAACCAAGATTTACACTGGAAGTTGCAGCAACAGA GATTGGCTATGCTATTTGGTACAGGAAAAAATCATAGAGATGACAGTACTGTTTCTACAGCCCCTATTGAGAACCATGTCCAGAAACTACAACCTATTAT GTTTGAAAATCTTGAAATTTCAAAACCACAAGTATGTGCTGCTGGTAATTCAAGAAAAGATGGTGCAACTAGTGGTGATCCAGCAACTGAGTGGTTCTTT GGGAATTCATATGATCAATTGACTGCCACGCCAACAAATAGGAGCAACAATGGCAATAATGACAACACAGGCAATTGGAATGGGGTTCAAGCATGGGGTG ATTTGAATCAGTACAGTGCTTTGCCCTAG
AA sequence Show only first row Show all	>Potri.005G149100.1 pacid=42804854 polypeptide=Potri.005G149100.1.p locus=Potri.005G149100 ID=Potri.005G149100.1.v4.1 annot-version=v4.1 MMAPDNLQAKQAPIDDNQITTSNRKTTTTRPQEEALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPFGGGCRKNKKIKSSSGLSSD SSGSSEIGGFNFFHGLSPAMKFNLGGLSFPRLNLSPNGIYNHFPSFGDISATSEAAATVTSPRFRLDPSVSSTAGSGSLMGFSYPLTSVSSGFCGATQEN TGGASVNVNTNLASSIESLSCINQDLHWKLQQQRLAMLFGTGKNHRDDSTVSTAPIENHVQKLQPIMFENLEISKPQVCAAGNSRKDGATSGDPATEWFF GNSYDQLTATPTNRSNNGNNDNTGNWNGVQAWGDLNQYSALP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Potri.005G149100 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Potri.007G058200 [exp]	9.79	0.7242
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	13.11	0.7960
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	41.15	0.7228	Pt-TCP1.1
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	43.80	0.7151
					Potri.001G387000 [exp]	51.67	0.7072
AT2G20740			Tetraspanin family protein (.1...		Potri.004G041500 [exp]	98.13	0.6837
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G127901 [exp]	100.01	0.6797
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	101.34	0.6902
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	101.44	0.7025	RHA2.1
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	131.62	0.6716

Compare expression of checked genes

Potri.005G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.