Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49900 306 / 7e-98 Phototropic-responsive NPH3 family protein (.1.2) AT5G13600 96 / 8e-21 Phototropic-responsive NPH3 family protein (.1) AT1G30440 82 / 3e-16 Phototropic-responsive NPH3 family protein (.1) AT5G64330 80 / 1e-15 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT3G08570 80 / 1e-15 Phototropic-responsive NPH3 family protein (.1) AT5G03250 79 / 2e-15 Phototropic-responsive NPH3 family protein (.1) AT2G47860 76 / 2e-14 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48130 76 / 2e-14 Phototropic-responsive NPH3 family protein (.1) AT3G50840 75 / 4e-14 Phototropic-responsive NPH3 family protein (.1) AT3G08660 75 / 4e-14 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048200 [exp] 88 / 3e-18 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.014G164000 [exp] 88 / 4e-18 AT5G48130 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 83 / 1e-16 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 82 / 2e-16 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 82 / 4e-16 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 81 / 6e-16 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.019G131600 [exp] 80 / 1e-15 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.007G053200 [exp] 79 / 2e-15 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 79 / 3e-15 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040484 [exp] 100 / 3e-22 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10011290 [exp] 97 / 3e-21 AT5G64330 438 / 3e-149 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10019290 [exp] 91 / 4e-19 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10001164 [exp] 83 / 1e-16 AT5G48130 582 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10001738 [exp] 82 / 3e-16 AT5G48130 577 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 81 / 7e-16 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10014858 [exp] 81 / 8e-16 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 79 / 5e-15 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10011082 [exp] 78 / 5e-15 AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 78 / 9e-15 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.005G149400.2 pacid=42802401 polypeptide=Potri.005G149400.2.p locus=Potri.005G149400 ID=Potri.005G149400.2.v4.1 annot-version=v4.1 ATGAGCAGCTGGAAGGAGTTGAGAGTTGCAGATACCATATATGAAGAAGAATATGAACATTCTTCTTCCTCCCCTTCTCTCTCTCTGTCTGATCTTTCTT CTCCTCCAACACCCCTCCGCTCTAGAGTAGAGTCATGGTCACTGGCGACAGGGCGAAAAGCGGATGTCTTGATCTATGTCATGGGAACTTGTTTCCATCT GCACAAGGATCCGCTGACATCAAGGAGCTCTTATTTAAGACGTCAACTGGCGGGGCTCTCCGAAATAACTCTGACATTAAACATAACGCCCGAAACATTT GCTCTAGCAGCAGACTTCTGCTATGGCACCCACGTTGTCATAACGCCGTTCAACGTTGTTCCCTTACGAATAGCAGCTGAGTTACTTGGCATGACGGAGA CGAACGGGAAACATGAAGAGAACTTGAATCAGATAACGGAAACGTATTTCCTTCGGGCCATCACCGTTGAGAGGGAGTTAGCGAGGGTTATTTTCTGTTC CTGCTTGCGTTTGCTTCCAGAGGCTGAAACGACAGCGTTTTTGGTCAGTAGGTGCGTTGAAGCGTTAAATTCGACGGGAGAGAGCGATGAAATGCTGGAT GGTTGTGTTGACGACGTTATAAACCTGGCAACCGACGATTTTCAAATAGTCGGTGAGTGTATGCAATGTAGGTTTGAGAGCCACGACGCGCTGTATAGGA TTGTGGACCTTTACATTCAGGAACATAGTAGCACGATAACAGAAGAGCAGAAGATTGAAATCTGCAATTTCATAGACTGTGATAAGCTCTCAACTCAATG TCTCATACACGCAGTGCAAAACCCTAGACTGCCTTTAAGATTCATAGTACGAGCCATGTTGGTCGAGCAGCTAAACACTCGCCGGACAGTCTTGACAACC CCCACCACAACTAATCACCATTATACACGCAGTCATCAAACTAGAGGCTCCATAACTCTGGGCTCAATCCTCCGACGAGATGCAGCAGTACGAGAAGCAG CTCAACTCAAGGTAGAAATGGACTCTACAAACTCACGAATTGAGAGCTTGGAAAAAGACCTATCTCGCATGAAAAAGCTCTTGCGAAAGTCTGAAAAGAA AAGAAGTTTAATGGAGAAGAAGCCTCTACAGAAGTCAGAGGTGGAGACAAGTGCGGTGATGAAGGAAAAGGGTTCGAAGCTTTTGCTTGAATCTGAAGAG GAAATTGGAAGAGTTCTGGAGTACTCAAGCTTGCATAAAATTTCGCACAAGTCTGTAATGGAAGAAAGAAGTTTGGCAAAGTCGTCATCTAGGTCTGCGA GTTTCCACCATGAATTGAGGGACGCTAATAAGATAGAAAAAGGTGAAAGAGGATCTGCTTCTTTTTCCGGGTTTCGGCTGCATTTTGGGAGAGAGAAAAT GGAAGGGTCTTCACGTTCAAAGTTCACAGGTAATGAATGTCCACGAACTTCCAAGAATAATATAAATGGCAAGGGATTGATTGACAGATTAAAACGCACA TTATGGGTGTCCAAATCTGATTCAAAGTGCAACTCTCGGAGTAAATACACAAATACAAATGATGGAAATGGAGAAAATTAA
AA sequence Show only first row Show all	>Potri.005G149400.2 pacid=42802401 polypeptide=Potri.005G149400.2.p locus=Potri.005G149400 ID=Potri.005G149400.2.v4.1 annot-version=v4.1 MSSWKELRVADTIYEEEYEHSSSSPSLSLSDLSSPPTPLRSRVESWSLATGRKADVLIYVMGTCFHLHKDPLTSRSSYLRRQLAGLSEITLTLNITPETF ALAADFCYGTHVVITPFNVVPLRIAAELLGMTETNGKHEENLNQITETYFLRAITVERELARVIFCSCLRLLPEAETTAFLVSRCVEALNSTGESDEMLD GCVDDVINLATDDFQIVGECMQCRFESHDALYRIVDLYIQEHSSTITEEQKIEICNFIDCDKLSTQCLIHAVQNPRLPLRFIVRAMLVEQLNTRRTVLTT PTTTNHHYTRSHQTRGSITLGSILRRDAAVREAAQLKVEMDSTNSRIESLEKDLSRMKKLLRKSEKKRSLMEKKPLQKSEVETSAVMKEKGSKLLLESEE EIGRVLEYSSLHKISHKSVMEERSLAKSSSRSASFHHELRDANKIEKGERGSASFSGFRLHFGREKMEGSSRSKFTGNECPRTSKNNINGKGLIDRLKRT LWVSKSDSKCNSRSKYTNTNDGNGEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	0	1
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	1.41	0.9326
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	6.92	0.9090
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Potri.001G188500 [exp]	7.54	0.8718
AT4G24790			AAA-type ATPase family protein...		Potri.015G088100 [exp]	7.74	0.8355
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G084700 [exp]	8.12	0.8579
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	8.48	0.8818
AT2G46810	bHLH	bHLH070	basic helix-loop-helix (bHLH) ...		Potri.014G106300 [exp]	8.94	0.8962
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.002G081500 [exp]	9.48	0.8718
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	10.67	0.8984	Pt-ACR4.2
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	12.64	0.8709

Compare expression of checked genes

Potri.005G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.