Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 518 / 0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 410 / 3e-143 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 258 / 2e-84 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 86 / 2e-18 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G084600 [exp] 448 / 1e-158 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.001G140000 [exp] 298 / 1e-99 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 295 / 2e-98 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 236 / 1e-75 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 90 / 1e-19 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032808 [exp] 539 / 0 AT4G08170 500 / 5e-179 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10007689 [exp] 535 / 0 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10035662 [exp] 481 / 1e-171 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 365 / 4e-127 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 328 / 3e-112 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 270 / 2e-86 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 259 / 1e-84 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 226 / 5e-72 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 76 / 2e-17 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 78 / 8e-16 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF05770 [poplar] [flax] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.005G149800.4 pacid=42803776 polypeptide=Potri.005G149800.4.p locus=Potri.005G149800 ID=Potri.005G149800.4.v4.1 annot-version=v4.1 ATGGGGTTGCAAGGACAGATAATACCGTATAAAAACGGAGAAAAAGAAGAAGACGACGATGAAAGGGCAGGAAAGGAGATATCACCGTTTCCTCCTCCTC CTCTTCATAGCAAATTCGCTGTTGTTGGTTATGCTCTCACCTCCAAGAAAATTAAGAGCTTTTTGAAGCCCAAGCTCGAAGGTTTGGCTAGGAATAAGGG GATTTTGTTTGTTGCAATTGATCAAAACAGGCCACTTTCAGATCAAGGTCCTTTTGACATTGTGTTGCACAAGCTAACTGGAAAGGAGTGGCGACAGATT CTTGAGGATTACAGACGGACACATCCAGAAGTCACTGTCCTTGATCCTCCTGATGCTATACAACATTTACATAATCGGCAGTCTATGCTCCAGTGTGTCG CTGATATGAATTTGTCCAACTCGTATGGGAAAGTAGGTATCCCTAAACAAATAGTTATTAAAAAGGATGCATCATCTATCCCTGGTGCAGTTGCAAAAGC TGGGCTGATGTTACCCATCGTTGCAAAGCCACTGGTTGCAGACGGAAGTGCAAAATCACATGAACTATCACTTGCCTATGATCAACAATCACTTCAGAAA CTTGAACCTCCACTTGTTCTTCAGGAGTTTGTCAACCATGGGGGTGTTATGTTTAAAGTTTATATTGTTGGGGAGACCATTAAGGTGGTGAGGCGTTTCT CATTACCTGATGTCTGTAAACGAGAGCTTTCGAACATTGCTGGTGTGTTCCGTTTTCCACGTGTTTCTTGTGCTGCCGCTTCTGCAGACAATGCTGATTT GGACCCTGGTGTTGCTGAGCTTCCTCCACGACCATTGCTTGAGAAACTTGCAAGGGAACTTTGTCGTCGACTGGGTCTCCGGTTGTTCAATCTTGATATT ATCCGAGAGCATGGGACCAGAGATCGATTTTATGTCATTGACATTAACTACTTCCCAGGTTACGGGAAAATGCCAGAGTACGAGCATATATTTACGGATT TCCTTCTGAGCCTTGTACAGAATCAATACAAGAAAAAATCCACCTAG
AA sequence Show only first row Show all	>Potri.005G149800.4 pacid=42803776 polypeptide=Potri.005G149800.4.p locus=Potri.005G149800 ID=Potri.005G149800.4.v4.1 annot-version=v4.1 MGLQGQIIPYKNGEKEEDDDERAGKEISPFPPPPLHSKFAVVGYALTSKKIKSFLKPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQI LEDYRRTHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLSNSYGKVGIPKQIVIKKDASSIPGAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQQSLQK LEPPLVLQEFVNHGGVMFKVYIVGETIKVVRRFSLPDVCKRELSNIAGVFRFPRVSCAAASADNADLDPGVAELPPRPLLEKLARELCRRLGLRLFNLDI IREHGTRDRFYVIDINYFPGYGKMPEYEHIFTDFLLSLVQNQYKKKST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Potri.005G149800 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411100 [exp]	2.00	0.8043
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	4.47	0.7674
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	16.30	0.7758
AT5G20030			Plant Tudor-like RNA-binding p...		Potri.005G216200 [exp]	25.29	0.7595
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	35.24	0.7004
AT5G23850			Arabidopsis thaliana protein o...		Potri.003G125000 [exp]	40.64	0.7189
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Potri.006G083100 [exp]	41.13	0.7141
AT3G18680			Amino acid kinase family prote...		Potri.007G110301 [exp]	51.91	0.7497
					Potri.019G131050 [exp]	61.48	0.7340
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	63.40	0.6935

Compare expression of checked genes

Potri.005G149800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.