Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10020 563 / 0 Protein of unknown function (DUF1005) (.1) AT4G29310 408 / 4e-140 Protein of unknown function (DUF1005) (.1) AT3G19680 375 / 4e-126 Protein of unknown function (DUF1005) (.1) AT1G50040 332 / 4e-110 Protein of unknown function (DUF1005) (.1) AT5G17640 300 / 8e-98 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112600 [exp] 746 / 0 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 415 / 2e-142 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 402 / 2e-137 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 302 / 1e-98 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032807 [exp] 578 / 0 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10034991 [exp] 404 / 1e-138 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 330 / 6e-109 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 320 / 1e-104 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 312 / 7e-104 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [poplar] [flax] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Potri.005G150100.1 pacid=42803721 polypeptide=Potri.005G150100.1.p locus=Potri.005G150100 ID=Potri.005G150100.1.v4.1 annot-version=v4.1 ATGGATCCTTGCCCTTTCGTGCGCTTAACAGTAGGAAATCTGGCTTTAAAAATCCCTGTCGCTTCAAAACCTGCACGCTCTGTGGTTCACCCATCATCTT CTCCCTGTTTTTGCAAAATCAAGCTCAAAAACTTCCCTCTTCAAACGGCTGTCATTCCTTACATTCCATCTCAATTTCCTGAAGGTCAGCTCCAAACTCC AGCTGCCACTTTCCACCTAAGCAAGTCTGATCTCGACCGGCTCGTTGCCAAATCTATTTTCACCAACAAACTCCAACTCAAAATCTCTCTCTATACTGGC CGCCTCGGCACTACTTGTGGAGTTAACTCTGGGAGGTTGTTAGGGAAAGTTTCTGTACCTTTGGATCTGGCGGGAACGGAATCTAGAGGTGTTACGTTTC ATAATGGATGGATTTCTATTGGAAAAGAGAGTGTAAAGAGTTCCTCTGCTGTATTTCATTTGAATGTTAAAGCTGAGCCTGATCCAAGGTTTGTTTTTCA ATTTGACGGAGAACCTGAGTGCAGTCCCCAAGTGTTTCAGATCCGAGGCAATATCAGGCAACCTGTTTTTACTTGCAAATTCAGCCTTAGAACCACCGGC GGTGGTGACCGCAATCGGAGATCCATATCATTGCAAGAGGAGCCCAGCAGCTCAAGGAGCTGGCTAAGTTCATTTGGTAGCGAAATAGAGAGACCACTGA AAGAAAGAAAAGGCTGGTCAATAACAGTCCATGACTTATCCGGCTCACCAGTTGCCGCAGCTTCAATGGTTACTCCATTCGTACCTTCACCTGGTTCAGA CAGAGTAAGCCGCTCGAACCCTGGTTCATGGCTCATCCTCCGCCCTGGAGCTGGTACCTGGAAACCATGGGGCCGGCTGGAGTCTTGGCGCGAGCGCGGC TCGTCTGATGGACTTGGCTACCGTTTTGAACTAATCCCTGACACAAACGGCACTATGAGCGCAGCCAGTATTGTATTAGCCGAGAGCACACTAAGTTCGC ACAAAGGAGGCAAGTTTGTAATTGATTTAGGAGCCTGCTCAAACGGACGAACCACGCCGGCAAATTCGGCTTCTCCTGTGTGTAGCCCAAGGGGTAGTGG CGATCACGGTTATGGATTGTGGCCTAATTGTATGCACAGAGGGTTTGTAATGTCGGCTAGCGTGGAAGGAGAAGGGAAGTGCAGTAAACCTGGCGTGGAA GTTGGTGTGCAGCACGTCAATTGTACTGAAGATGCAGCTGCTTTCGTGGCATTAGCTGCTGCCGTTGATTTGAGTATGGATGCTTGTAAGCTCTTCTCGC AACGGTTAAGAAAAGAGCTCTGTCAAGATCAGGATATGCTTGGCTGA
AA sequence Show only first row Show all	>Potri.005G150100.1 pacid=42803721 polypeptide=Potri.005G150100.1.p locus=Potri.005G150100 ID=Potri.005G150100.1.v4.1 annot-version=v4.1 MDPCPFVRLTVGNLALKIPVASKPARSVVHPSSSPCFCKIKLKNFPLQTAVIPYIPSQFPEGQLQTPAATFHLSKSDLDRLVAKSIFTNKLQLKISLYTG RLGTTCGVNSGRLLGKVSVPLDLAGTESRGVTFHNGWISIGKESVKSSSAVFHLNVKAEPDPRFVFQFDGEPECSPQVFQIRGNIRQPVFTCKFSLRTTG GGDRNRRSISLQEEPSSSRSWLSSFGSEIERPLKERKGWSITVHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGSWLILRPGAGTWKPWGRLESWRERG SSDGLGYRFELIPDTNGTMSAASIVLAESTLSSHKGGKFVIDLGACSNGRTTPANSASPVCSPRGSGDHGYGLWPNCMHRGFVMSASVEGEGKCSKPGVE VGVQHVNCTEDAAAFVALAAAVDLSMDACKLFSQRLRKELCQDQDMLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	0	1
AT3G53400			unknown protein		Potri.006G128800 [exp]	2.82	0.7848
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.019G067400 [exp]	4.24	0.7987
AT1G76270			O-fucosyltransferase family pr...		Potri.002G011100 [exp]	4.89	0.7111
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Potri.014G107500 [exp]	5.56	0.6978
AT3G23750			Leucine-rich repeat protein ki...		Potri.013G035900 [exp]	7.54	0.7174
					Potri.019G023500 [exp]	8.06	0.7510
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Potri.003G073700 [exp]	10.19	0.7094
					Potri.001G308800 [exp]	10.77	0.7697
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G103000 [exp]	12.24	0.7310
AT4G02040			unknown protein		Potri.010G027500 [exp]	14.07	0.7119

Compare expression of checked genes

Potri.005G150100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.