Plant FIBer expression Database

Potri.005G150300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G034000
[exp]
61 / 3e-14 ND /
Potri.005G130750
[exp]
59 / 1e-13 ND /
Potri.001G000450
[exp]
40 / 8e-06 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028245
[exp]
70 / 7e-18 ND /
PFAM info
Representative CDS sequence
>Potri.005G150300.5 pacid=42805125 polypeptide=Potri.005G150300.5.p locus=Potri.005G150300 ID=Potri.005G150300.5.v4.1 annot-version=v4.1
ATGTGTTACAGGGAGAGATGCTCAACGTGCGGCAAGACCACCTGGGGTGGTTGTGGCAGGCATGTTCCTTCCGTTTATAGGGGCATCCCTGAGGGGCAAC
ACTGTCTCTGCCGTGAATGGCCTGGTGTCGATCCCAATAACCCCAAAGGAAATGAGCTTGAGCTCTAG
AA sequence
>Potri.005G150300.5 pacid=42805125 polypeptide=Potri.005G150300.5.p locus=Potri.005G150300 ID=Potri.005G150300.5.v4.1 annot-version=v4.1
MCYRERCSTCGKTTWGGCGRHVPSVYRGIPEGQHCLCREWPGVDPNNPKGNELEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G150300
[exp]
0 1
AT5G60340 P-loop containing nucleoside t... Potri.006G228500
[exp]
5.47 0.7205
AT1G02280 PPI1, ATTOC33, ... PLASTID PROTEIN IMPORT 1, tran... Potri.002G183400
[exp]
9.89 0.7286 Pt-PPI1.3
AT3G17880 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, AR... Potri.012G045000
[exp]
11.04 0.7452 Pt-ATTDX.1
AT3G10850 GLY2, GLX2-2 GLYOXALASE 2-2, Metallo-hydrol... Potri.019G062600
[exp]
17.86 0.7183 Pt-GLX2.1
AT5G64730 Transducin/WD40 repeat-like su... Potri.001G306500
[exp]
22.22 0.6811
AT5G56760 SAT-52, AtSerat... SERINE ACETYLTRANSFERASE 52, s... Potri.015G147000
[exp]
23.15 0.7257
Potri.008G020500
[exp]
24.97 0.7421
AT1G69390 ARC12, ATMINE1 accumulation and replication o... Potri.010G162600
[exp]
35.07 0.7085
Potri.019G101001
[exp]
35.24 0.6992
AT4G26840 ATSUMO1, SUMO1,... ARABIDOPSIS THALIANA SMALL UBI... Potri.002G224700
[exp]
35.87 0.7160 Pt-SUM1.1

Potri.005G150300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.