Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57230 322 / 1e-111 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 293 / 1e-100 MADS AGL21 AGAMOUS-like 21 (.1) AT2G22630 278 / 8e-95 MADS AGL17 AGAMOUS-like 17 (.1) AT2G14210 242 / 2e-80 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT4G09960 158 / 2e-47 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 157 / 6e-47 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G22540 152 / 2e-45 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45650 150 / 2e-44 MADS AGL6 AGAMOUS-like 6 (.1) AT1G26310 149 / 1e-43 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 149 / 1e-43 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109601 [exp] 390 / 9e-139 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2) Potri.009G079000 [exp] 325 / 4e-113 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.001G284600 [exp] 305 / 3e-105 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.001G284301 [exp] 305 / 3e-105 AT4G37940 272 / 7e-93 AGAMOUS-like 21 (.1) Potri.004G064300 [exp] 159 / 8e-48 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 158 / 2e-47 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.013G104900 [exp] 155 / 1e-46 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 152 / 3e-45 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.005G155300 [exp] 152 / 4e-45 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007100 [exp] 241 / 5e-80 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10042919 [exp] 217 / 2e-71 AT3G57230 162 / 6e-51 AGAMOUS-like 16 (.1.2) Lus10020477 [exp] 199 / 2e-64 AT4G37940 195 / 4e-64 AGAMOUS-like 21 (.1) Lus10028215 [exp] 192 / 2e-62 AT3G57230 164 / 4e-52 AGAMOUS-like 16 (.1.2) Lus10005302 [exp] 158 / 5e-47 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 155 / 7e-46 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10017871 [exp] 149 / 9e-45 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 151 / 2e-44 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 151 / 2e-44 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10034662 [exp] 149 / 5e-44 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.005G150501.15 pacid=42805437 polypeptide=Potri.005G150501.15.p locus=Potri.005G150501 ID=Potri.005G150501.15.v4.1 annot-version=v4.1 ATGGGGAGGGGGAAGATAGAGATAAGAAGGATTGATAATTCGACAAGCAGGCAAGTGACCTTCTCAAAGAGGAGGGGTGGGTTGTTGAAGAAAGCCAAGG AGCTGGCGATCCTTTGCGACGCAGAAGTTGGAGTCATGATCTTCTCTAGCACCGGCAAGCTCTATGATTTCTCTAGCACCAGCATGAAATCAGTCATTGA ACGATACAACAAATCAAAAGAGGTGCATCATCTAATGGGCAACCCAACCTCAGAACTCAAGTTCTGGCAAAGGGAGACGGCAATGTTGAGACAGCAACTG CAAAACTTGCAAGAAAATCATCGGCAAATGATGGGTGAAGAACTTTCTGGCTTAAGCGTAAAGGATTTGCAGAATTTGGAGAACCAATTGGAAATGAGTC TCCGGGGTGTTCGCATGAAAAAGGACCAAAATTTAATGGATGAAATACTAGAACTAAATAGAAAGGGAAACCTCATTCACCAAGAAAATATGGAACTCTA TAAGAAGGCAAACCTAATTTGTCATGAAAATCAAGAATTGTATAAGAAGGTTTATGGAACCAGAGAAGTAAATGGAGCAAACAGGAATTCCCTTCTCACA AATGGTCTGGGCATGGGAGAGGAATCACATGTACCTGTCCATCTCCAGCTTAGCCAGCCACAGCAACAAAACTATGATACACCAGCAAGTGCTACAAAGT TGGGAAAATTCAGTGATTCCAAAATGCAAAAGCCCTCAGATGTGATAGAAGATGCACCTCCATTGTATGCCTTTTGGTCATACAAAATTCATATGGCTAA AGTGAAAGGAGAAGAATTCTTTCATCAATAA
AA sequence Show only first row Show all	>Potri.005G150501.15 pacid=42805437 polypeptide=Potri.005G150501.15.p locus=Potri.005G150501 ID=Potri.005G150501.15.v4.1 annot-version=v4.1 MGRGKIEIRRIDNSTSRQVTFSKRRGGLLKKAKELAILCDAEVGVMIFSSTGKLYDFSSTSMKSVIERYNKSKEVHHLMGNPTSELKFWQRETAMLRQQL QNLQENHRQMMGEELSGLSVKDLQNLENQLEMSLRGVRMKKDQNLMDEILELNRKGNLIHQENMELYKKANLICHENQELYKKVYGTREVNGANRNSLLT NGLGMGEESHVPVHLQLSQPQQQNYDTPASATKLGKFSDSKMQKPSDVIEDAPPLYAFWSYKIHMAKVKGEEFFHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Potri.005G150501 [exp]	0	1
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053100 [exp]	2.00	0.8727
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.014G136200 [exp]	6.63	0.8681	Pt-HPT2.1
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.007G106400 [exp]	7.14	0.8326
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G134200 [exp]	8.12	0.8555
AT5G36930			Disease resistance protein (TI...		Potri.003G084333 [exp]	9.05	0.7958
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	12.64	0.8440
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G061900 [exp]	13.96	0.8526
					Potri.019G090900 [exp]	16.00	0.8496
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	18.13	0.7867
AT3G14470			NB-ARC domain-containing disea...		Potri.001G022800 [exp]	18.70	0.8170

Compare expression of checked genes

Potri.005G150501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.