Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60930 1386 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 752 / 0 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 687 / 0 KICP-02 ATP binding microtubule motor family protein (.1) AT2G36200 262 / 3e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 258 / 7e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45850 253 / 4e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44050 249 / 2e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 243 / 7e-66 ATP binding microtubule motor family protein (.1) AT3G19050 246 / 1e-65 POK2 phragmoplast orienting kinesin 2 (.1) AT4G14150 242 / 5e-65 KINESIN-12A, PAKRP1 phragmoplast-associated kinesin-related protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106000 [exp] 2132 / 0 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 782 / 0 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 775 / 0 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 698 / 0 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 267 / 7e-74 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 264 / 1e-72 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 261 / 1e-71 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G077800 [exp] 259 / 2e-71 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 258 / 5e-71 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000762 [exp] 1627 / 0 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 1618 / 0 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024805 [exp] 868 / 0 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 868 / 0 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 781 / 0 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 261 / 1e-71 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 260 / 2e-71 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 258 / 1e-70 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 258 / 2e-70 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10021340 [exp] 254 / 1e-69 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.005G150800.4 pacid=42803674 polypeptide=Potri.005G150800.4.p locus=Potri.005G150800 ID=Potri.005G150800.4.v4.1 annot-version=v4.1 ATGGAGAGTTCGGAGTGCGTGAGAGTTGCCGTTAATATTCGGCCGTTGATCACACCAGAGCTTCTAATTGGTTGTACAGACATCATCACCGTTGTTCCTG GAGAGCCGCAGGTTCAAATCGGCTCGCATTCGTTCACTTATGATTATGTATACGGGAGTACCGCGTCACCTTCTTCAGAGATTTTCAATGATTGCGTTGC TCCACTGGTTGAGGCACTTTTAAATGGCTACAATGCCACCGTCCTTGCCTATGGCCAGACTGGTTCGGGGAAAACATATACAATGGGGACCAATTACTCT GGAGAAGGAAGTAATAGTGGAATTATACCAAAAGTAATGGATAGTATATTTAAGAGAGTGGAGGCTGCTAATGAATCGTCAGAGTTTTTGATACGGGTTT CATTCATCGAGATATTTAAGGAAGAGGTGTTCGATTTGCTCGACCCCAATTCGGCAGCTTTCTCTAAAGGTGAATGGGTGAATGCGGCAAAGCCTGCAGT GCCTTCTAGAGTTCCAATTCAGATAAGAGAAACAGCAAATGGAGGGATCACACTTGCTGGTGTTACTGAAGCAGAAGTTAGAAATAAAGAGGAGATGGCA TCTTATTTGTCGCGAGGGTCTTTATCTCGTGCAACTGGCAGTACTAACATGAACAGTCAATCTAGTCGCTCGCATGCTATATTTACAATTACCATGGAGC AAAAGAAAATTTCTTCCTGTCCAATTGGAGTAAATAATGATGATATCGGTGATGACATATTATGTGCAAAACTTCATTTGGTTGACCTTGCTGGATCAGA ACGTGCGAAAAGAACAGGTGCAGATGGCATGCGTTTCAAAGAAGGCATCCATATTAATAAGGGTTTGCTGGCCCTTGGAAATGTGATAAGTGCACTGGGG GATGAGAAAAAAAAGAAAGAAGGGGGCCATGTTCCTTATCGCGATAGCAAGTTGACACGCTTGTTACAGGATTCTTTGGGAGGAAACAGCAAAACAGTGA TGATTGCATGTGTTAGCCCTGCTGACACAAATGCGGAGGAGACCTTGAATACATTGAAGTATGCAAATCGTGCTCGTAATATTCAGAACAAAGCAGTGGT CAATCGTGATCCAATGGCTGCTCAAATGCAGCAAATGAGAGGCCAAATTGAGCAATTACAGGCTGAACTATTATTTTATCGTGGTGATGCAACCATTCCA TTCGACAAGCTTCAGATTCTCAAACACAAAGTGTCATTGCTTGAAGTGAGTAATGCTGAATTACAACGGGAACTTCAAGAGAGACGACTCACCTGTGAAC ATTTGAATCAACGTGCTGTTGATGCTCAGGTTGAAAAAGACAAATTGATAATGCAAATTGAATCAGCTCGAAATGGTAAATCCTGGGATGAGATTGACTC CAGTATAAATCAGGATTATGAATTGGTCAAAATGTATGTGTCAAAAATTCAAGAGTTAGAAGGAGAGTTGTTGCATTTGAAAAACTTGTCCTCCTCAAAG CGTAATCAATTTGTTGATTATCTCGACTCGGATGATGAAAGGTTCCGCTCAAAAGATGCTTTACTCCAATCTCTAAATGAGCTTTCATCCAATTCTGACA CAAAAGCAGCTGACATTTCAGATGAAATTGAAGACGAGGAAAAAGAGCAAGAGCATTCTTCTCTGCAAGAAAAATTGGACAGGGAGCTGAAAGAATTGGA CAGAAAACTAGAACAAAAGGAGGCTGAAATGAAGCGTTTTACAAGTGTGGATACTTCAGTTCTTAAGCAGCATTATGATAAAAAAGTTCAGGACTTAGAA CAAGAAAAGAGGCTTTTGCAGAAAGAGATTGAGGAATTGAGATACAATCTTGCCAATATATCATCTACTTCTGATGACGGTGCTAAAAAATTAAAGGAAG ACTATCTTCAAAAGTTGACAGTCCTTGAGGCACAGGTTGCGGAGTTGAAGAAGAAACAAGATGCTCAAGCTCAATTATTGAGACAAAAACAAAAGAGTGA TGAGGCTGCAAGACGACTAAATGAGGAGATTCAGAGAATTAAGACTCAAAAGGTTCAACTTCAACATAAGATCAAACAAGAGTCTGAGCAATTCAGGTTA TGGAAGGCATCAAGGGAAAAGGAAGTTCTTCAGCTTAAGAAAGAGGGTAGGAGAAATGAGTACGAGATGCACAAGTTGTTAGCTTTGAATCAGAGGCAGA AAATGGTCCTACAAAGAAAGACAGAAGAAGCTGCCATGGCTACAAAAAGGCTAAAAGAGCTTTTAGAATCAAGAAAGATGTCACGTGAAACTTTCGGTGT TGGAAATGGCAATGGCCCTGGAGTTCAGGCCCTAATGCAGGCAATTGAGCATGAACTTGAAGTCACATTACGGGTACATGAAGTACGTTCTGAGTACGAG CATCAAATGCAAGTGAGAGCTAGAATGGCCAATGAAATGGCAAAGTTAAAGGAAGAAGGAGAGATACTAAAACAAACTAATTCAAGTATTTGCCCCCCAA CAATGTCTCCTGGAGCTAGAAATTCGAGGATTTTTGCTCTTGAAAACATGCTTGCTGCTTCTTCTAGCACCTTGGTTTCCATGGCATCACAATTGTCTGA AGCAGAAGAGCGTGAACGGGGCTTTAGTGGAAGGGGACGTTGGAATCATGTTCGGTCACTTGCTGATGCAAAAAATGTGATGAATTATCTGTTCAATATA GCATCCTCCACTAGGTGCTTGTTGCGAGATAAAGAAGTTGCCTGTAGAGAAAAGGATACGGAAATAAGAGATCTGAAGGAAAAAGTGGTGAAACTTAGTA GTCTAGCGAGGCATCTTGAAATCCAGAAGACAGAACTTATTCATCAAGTGAAGTCAGAGAGTTCAGCCTTGAAAAAATACTCCATCAAAAGTGAGGCCGG TTCTGAAGAATATAAGCGTGACATGCATAGACAGGCGCAACAGAGCACCCCCATCATATTGGATGATATGGATACATCTGAATCAGAACATTCAGATAAT AATATGACAGATGATGAATGGGTACAATCAGAGAAAGAGGCGACAGATGATGAATGGGTAATGTCAGGGAAACGGCGAGGAAAGAAAAGAAATTCCAAAA CCAAAGGCCGTTCAAGTACAGGAGATATCCATGATCAAGAAAACTGCAAATCAGATTGTTCTGGTGAGGCAGCCACTACTGTTCAAGCATGTTGTGCTTG TAGTAAATACTCTTTATGCAAGACATCCAAGTGCCAATGCCGAGCATCTGGGGGTTTTTGTGGGATATCATGTGGCTGTATGCCAAATAAATGTTCTAAT AGAGGAGCTATCGAGATAAATGATTCGACACTTGGATCTAATGAAACAGAGAAGAATCAGGTCCTTGTTTCTCAGGGTGCAATGCTGCTACAAAGTGCCC TAGTTGAGAAGCCTGTGGAAACAAATGACGATAGTGTGGTTAGAAGGAAGCCTCTATCAGACATAGGCAATACAGTGGCCAAATCCAATGCACCAAAGGC AAACCAGAGAAAGAAATGGCGGAAATCAGTAATTCAGCTTGTTCCTGTTCCCCCACCCAGCACAAAATCAGAAAACACTGAAGCCGCTCCCCAAAAGGCT GTGGGATCAGCTGCATCAAATGGTGTAAGTGAAGCAGATAGTAGTGTAATTGAGGCAGAAATTCCTTTGAAGCTGCCGAGGGCTATGCAATCAGCTGCAC CAAATGGTGGCATCCTTTTGAGAGAGAGGAATGCTGATCAAGCAGAAGAATCAGCAAATAAGGAGGCTGTTGTGCTTCCTACAAGAAGCAGCCCCGCCCG CCCGAAAAGAAAATCTGATGAGAAAGAGAACTATGGCCGCTAA
AA sequence Show only first row Show all	>Potri.005G150800.4 pacid=42803674 polypeptide=Potri.005G150800.4.p locus=Potri.005G150800 ID=Potri.005G150800.4.v4.1 annot-version=v4.1 MESSECVRVAVNIRPLITPELLIGCTDIITVVPGEPQVQIGSHSFTYDYVYGSTASPSSEIFNDCVAPLVEALLNGYNATVLAYGQTGSGKTYTMGTNYS GEGSNSGIIPKVMDSIFKRVEAANESSEFLIRVSFIEIFKEEVFDLLDPNSAAFSKGEWVNAAKPAVPSRVPIQIRETANGGITLAGVTEAEVRNKEEMA SYLSRGSLSRATGSTNMNSQSSRSHAIFTITMEQKKISSCPIGVNNDDIGDDILCAKLHLVDLAGSERAKRTGADGMRFKEGIHINKGLLALGNVISALG DEKKKKEGGHVPYRDSKLTRLLQDSLGGNSKTVMIACVSPADTNAEETLNTLKYANRARNIQNKAVVNRDPMAAQMQQMRGQIEQLQAELLFYRGDATIP FDKLQILKHKVSLLEVSNAELQRELQERRLTCEHLNQRAVDAQVEKDKLIMQIESARNGKSWDEIDSSINQDYELVKMYVSKIQELEGELLHLKNLSSSK RNQFVDYLDSDDERFRSKDALLQSLNELSSNSDTKAADISDEIEDEEKEQEHSSLQEKLDRELKELDRKLEQKEAEMKRFTSVDTSVLKQHYDKKVQDLE QEKRLLQKEIEELRYNLANISSTSDDGAKKLKEDYLQKLTVLEAQVAELKKKQDAQAQLLRQKQKSDEAARRLNEEIQRIKTQKVQLQHKIKQESEQFRL WKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAMATKRLKELLESRKMSRETFGVGNGNGPGVQALMQAIEHELEVTLRVHEVRSEYE HQMQVRARMANEMAKLKEEGEILKQTNSSICPPTMSPGARNSRIFALENMLAASSSTLVSMASQLSEAEERERGFSGRGRWNHVRSLADAKNVMNYLFNI ASSTRCLLRDKEVACREKDTEIRDLKEKVVKLSSLARHLEIQKTELIHQVKSESSALKKYSIKSEAGSEEYKRDMHRQAQQSTPIILDDMDTSESEHSDN NMTDDEWVQSEKEATDDEWVMSGKRRGKKRNSKTKGRSSTGDIHDQENCKSDCSGEAATTVQACCACSKYSLCKTSKCQCRASGGFCGISCGCMPNKCSN RGAIEINDSTLGSNETEKNQVLVSQGAMLLQSALVEKPVETNDDSVVRRKPLSDIGNTVAKSNAPKANQRKKWRKSVIQLVPVPPPSTKSENTEAAPQKA VGSAASNGVSEADSSVIEAEIPLKLPRAMQSAAPNGGILLRERNADQAEESANKEAVVLPTRSSPARPKRKSDEKENYGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60930			P-loop containing nucleoside t...		Potri.005G150800 [exp]	0	1
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	2.44	0.9717	TOP2.3
AT3G20150			Kinesin motor family protein (...		Potri.001G360200 [exp]	3.16	0.9717
AT3G19050		POK2	phragmoplast orienting kinesin...		Potri.004G145800 [exp]	4.47	0.9605
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	5.47	0.9649
AT1G72250			Di-glucose binding protein wit...		Potri.001G436200 [exp]	6.32	0.9633
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.001G415800 [exp]	6.32	0.9554
AT5G49880			mitotic checkpoint family prot...		Potri.004G228900 [exp]	7.74	0.9466
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	8.12	0.9595
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	8.77	0.9588
AT5G11510	MYB	ATMYB3R-4, AtMY...	myb domain protein 3R4, myb do...		Potri.006G241700 [exp]	9.53	0.9513	Pt-MYB3.2,MYB160

Compare expression of checked genes

Potri.005G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.