Plant FIBer expression Database

Potri.005G151275 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43760 268 / 2e-81 DNAse I-like superfamily protein (.1)
AT1G40390 114 / 6e-27 DNAse I-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G063901
[exp]
1107 / 0 AT1G43760 266 / 1e-80 DNAse I-like superfamily protein (.1)
Potri.003G047001
[exp]
919 / 0 AT1G43760 265 / 5e-82 DNAse I-like superfamily protein (.1)
Potri.019G047975
[exp]
724 / 0 AT1G43760 157 / 3e-42 DNAse I-like superfamily protein (.1)
Potri.004G128941
[exp]
702 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128961
[exp]
702 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128860
[exp]
702 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128880
[exp]
702 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128921
[exp]
702 / 0 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1)
Potri.004G128901
[exp]
700 / 0 AT1G43760 149 / 3e-39 DNAse I-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0530 DNase_I-like PF03372 Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence
>Potri.005G151275.1 pacid=42804064 polypeptide=Potri.005G151275.1.p locus=Potri.005G151275 ID=Potri.005G151275.1.v4.1 annot-version=v4.1
ATGGACGCAATGGGAGGTGATACAGATGGGGAACAAACCGATAAGGAGTCAACGTCAACGATCGTGACAACCCCTCAAACCCTGAATTCCACCGAAAGGG
AAACTGTTAATCAGTTAGCTATTAAGGCTAGAGACTCTCTAGAGAAAAAGAAAAAGGGTCCAAAAGCCTCTTCAAAGAAGAATAAGAAATCTGGCTCCTC
TCCAGGAGGCACGTCAAGAGGTTTGAATGATCCTATAAAGCATTCAGAATTGCGTCGGCTCATCCATCAAGAGAGGATAACTCTTTTTGGTCTGGTTGAA
ACTCGAGTTAAAGACAAGAATAAAGATCATGTTTCTCAACTTCTTCTGCGTTCTTGGTCCTTCTTGTATAATTATGATTTCTCTTGTCGTGGGCGTATTT
GGGTTTGTTGGAATGCTGATACGGTGAAGGTGGATGTTTTTGGAATGTCAGACCAGGCTATTCATTCAACCCCGTGGATTCTTATGGGTGATTTTAATGT
TATCCGCAACCAGTCGGACAGGTTAGGAGGGTCTACTACGTGGGCTGGTACTATGGACAGATTGGATACATGTATTCGAGAAGCGAAAGTAGATGATCTT
CGGTATTCAGGTATGCATTATACTTGGTCGAATCAATGTCCTGAGAATCTGATTATGCGGAAACTAGATAGAGTGCTTGTCAATGAGAAGTGGAATTTGA
ACTTCCCATTATCGGAAGCTAGATTTTTGCCTTCGGGTATGTCAGACCATTCTCCTATGGTGGTAAAGGTTATTGGCAATGATCAGAACATAAAGAAACC
ATTCAGATTCTTCGATATGTGGATGGATCATGACGAGTTCATGCCCTTGGTGAAGAAGGTATGGGATCAGAATTCGGGGGGTTGTCCAATGTATCAGCTA
TGTTGCAAACTAAGAAAGCTAAAGCAGGAATTTAAACTTTTCAATATGGCTCACTTCTCCAACATTTCAGATAGAGTGAAAGATGCAAAAAACGAAATGG
ATAAGGCTCAACAGGCTCTGCATACAGCGCATGAGAATCCAATTTTGTGCATGCGAGAAAGGGATGCTGTTCATAAATACGCTTCTACCGTCAGGGCTGA
AGAGAGTTTTTTCAAACAGAAGGCAAGGATACAATGGCTTAGCTTGGGGGATCAGAATACTAGCTACTTTCATAAATCAGTAAATGGAAGACAGAATCGA
AATAAGCTTCTATCACTTACAAGGGAGGATGGAGAGGTTGTCGAAAGACACGAGGCAGTCAAATCAGAAGTAATTGCATACTTCCATCATGTGTTAGGAG
TGGATCAGATGCCTAGGGTTCTAAACGAGGAAGTGATGGAATCGGCAATTAACTTGAAACTGTCTTCAACGCAACAGCATGTACTCGCACAAGATGTAAC
AAGGGAGGAGATTAAGCATGCTATGTTTAGTTTGAAGAACAACAAAGCCCCTGGTCCGGATGGCTTTAACGGAGGTTTCTTCAAAAGAATGTGGCACATA
GTTGGGGAAGATGTAATCAACGCTGTTAGATCCTTCTTTCAGACTCGTAGAATGCTTAAAGAAATGAATGCTACATCCATTTCCCTTATTCCTAAAGTTG
CTAATCCTACAAGGTTGACAGATTTTCGTCCTATATCTTGCTGCAATACAGTGTACAAATGCATCGCTAAGATTCTAGCTGGGAGAATCAAAGTTGTTTT
GCCATCCTTAGTTGGTCCATAA
AA sequence
>Potri.005G151275.1 pacid=42804064 polypeptide=Potri.005G151275.1.p locus=Potri.005G151275 ID=Potri.005G151275.1.v4.1 annot-version=v4.1
MDAMGGDTDGEQTDKESTSTIVTTPQTLNSTERETVNQLAIKARDSLEKKKKGPKASSKKNKKSGSSPGGTSRGLNDPIKHSELRRLIHQERITLFGLVE
TRVKDKNKDHVSQLLLRSWSFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQAIHSTPWILMGDFNVIRNQSDRLGGSTTWAGTMDRLDTCIREAKVDDL
RYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLNFPLSEARFLPSGMSDHSPMVVKVIGNDQNIKKPFRFFDMWMDHDEFMPLVKKVWDQNSGGCPMYQL
CCKLRKLKQEFKLFNMAHFSNISDRVKDAKNEMDKAQQALHTAHENPILCMRERDAVHKYASTVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRQNR
NKLLSLTREDGEVVERHEAVKSEVIAYFHHVLGVDQMPRVLNEEVMESAINLKLSSTQQHVLAQDVTREEIKHAMFSLKNNKAPGPDGFNGGFFKRMWHI
VGEDVINAVRSFFQTRRMLKEMNATSISLIPKVANPTRLTDFRPISCCNTVYKCIAKILAGRIKVVLPSLVGP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43760 DNAse I-like superfamily prote... Potri.005G151275
[exp]
0 1
Potri.010G072501
[exp]
1.00 1.0000
AT1G40390 DNAse I-like superfamily prote... Potri.003G046951
[exp]
3.87 0.9222
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.006G176800
[exp]
7.48 0.8622
AT5G57970 DNA glycosylase superfamily pr... Potri.001G044402
[exp]
7.93 0.8787
AT2G19590 ATACO1, ACO1 ACC oxidase 1 (.1) Potri.006G151600
[exp]
11.22 0.7822 ACO5
Potri.010G032101
[exp]
13.71 0.6032
AT1G62420 Protein of unknown function (D... Potri.011G023301
[exp]
14.07 0.7098
AT4G37530 Peroxidase superfamily protein... Potri.001G329200
[exp]
14.28 0.7957
AT5G40990 GLIP1 GDSL lipase 1 (.1) Potri.013G065100
[exp]
14.45 0.7486
AT5G23760 Copper transport protein famil... Potri.015G144200
[exp]
14.56 0.5863

Potri.005G151275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.