Plant FIBer expression Database

Potri.005G151700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24440 205 / 3e-70 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.1), transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001864
[exp]
206 / 1e-70 AT4G24440 201 / 7e-69 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.1), transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.2)
Lus10032829
[exp]
110 / 3e-29 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02268 TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain
Representative CDS sequence
>Potri.005G151700.4 pacid=42802319 polypeptide=Potri.005G151700.4.p locus=Potri.005G151700 ID=Potri.005G151700.4.v4.1 annot-version=v4.1
ATGGCGACGTTTGAGCTGTATAGAAGATCGACGATCGGGATGTGCTTGACGGAGACTCTTGATGACATGGTTCAAAACGGTACTCTCAGTCCTGAGCTAG
CCTTCCAGGTTCTTGTTCAGTTTGATAAGTCCATGACTGAAGCTTTGGAAACAAAAGTGAAGAGCAAAGTCTCAATTAAGGGACATCTGCATACCTACAG
ATTCTGCGACAATGTTTGGACCTTCATTTTACAGGATGCTATGTTTAAGAATGAGGACACGCAGGAGAATGTTGGGCGGGTTAAAATAGTGGCATGCGAC
TCAAAGCTGCTTACGCAATGA
AA sequence
>Potri.005G151700.4 pacid=42802319 polypeptide=Potri.005G151700.4.p locus=Potri.005G151700 ID=Potri.005G151700.4.v4.1 annot-version=v4.1
MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACD
SKLLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24440 transcription initiation facto... Potri.005G151700
[exp]
0 1
AT1G73030 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PR... Potri.001G194400
[exp]
3.74 0.7837
AT5G40370 GRXC2 glutaredoxin C2, Glutaredoxin ... Potri.001G347700
[exp]
6.24 0.7396 PtrcGrx_C2
AT1G73030 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PR... Potri.006G158538
[exp]
6.32 0.7752
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Potri.006G124100
[exp]
12.00 0.7167
AT2G24860 DnaJ/Hsp40 cysteine-rich domai... Potri.006G266800
[exp]
12.24 0.7181
AT1G52740 HTA9 histone H2A protein 9 (.1) Potri.006G249400
[exp]
21.16 0.7343 HTA906
AT3G09640 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascor... Potri.016G084800
[exp]
28.24 0.6793 APX1.1
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.014G060300
[exp]
28.46 0.6810
AT4G39630 unknown protein Potri.007G085100
[exp]
33.66 0.6914
AT5G20920 EIF2 BETA, EMB1... embryo defective 1401, eukaryo... Potri.013G158400
[exp]
34.40 0.7131 Pt-EIF2.3

Potri.005G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.